Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g06
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)              132   2e-31
SB_36663| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)                       29   3.0  
SB_39788| Best HMM Match : Ricin_B_lectin (HMM E-Value=6.4e-14)        29   3.0  
SB_32967| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   27   9.2  
SB_33764| Best HMM Match : DUF454 (HMM E-Value=8.8)                    27   9.2  
SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)               27   9.2  

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score =  132 bits (320), Expect = 2e-31
 Identities = 61/114 (53%), Positives = 83/114 (72%)
 Frame = +3

Query: 90  NNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFIL 269
           N K  +KE+ELLLQ+FSR+VSTKSS LFY NA IVSAIP+WLFWR+H ++  ++ I F +
Sbjct: 3   NGKKLSKEDELLLQNFSRSVSTKSSILFYANALIVSAIPLWLFWRIHQMDPYSSGILFAV 62

Query: 270 VTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDER 431
           +T  STWL+A AY+N KFQLKH             ++++L  +KK++R+EKDER
Sbjct: 63  MTLVSTWLVAFAYKNVKFQLKHKIAQRRDAAITKEVNQELDPNKKLTRQEKDER 116



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/74 (25%), Positives = 38/74 (51%)
 Frame = +3

Query: 387 LADDKKMSRKEKDERILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVN 566
           +A+ KK+S++  DE +L  +N        +  +FY NAL ++ + L  F+ +    P  +
Sbjct: 1   MANGKKLSKE--DELLL--QNFSRSVSTKSSILFYANALIVSAIPLWLFWRIHQMDPYSS 56

Query: 567 YIVSLTXCIWTSWL 608
            I+     + ++WL
Sbjct: 57  GILFAVMTLVSTWL 70


>SB_36663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = -1

Query: 232 ECTLQNNQIGIAETIKAFP*KRADDFVDTFRLKSCNNNSSSFVKALLF-FPDIFTK*VTL 56
           E  +  +++G+A ++ A   +RAD+ +++  ++     S S VK +L   P+   K ++ 
Sbjct: 3   ESIVDASRLGVATSLSAETPRRADELIESANMERNKGKSRSQVKEMLLKVPEFIKKSISS 62

Query: 55  TFTNTNK 35
           T ++ ++
Sbjct: 63  TISDEDE 69


>SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)
          Length = 487

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +2

Query: 5   SCLATEQY---AAFICVCKS*SNLFSKNVWKEQQSFYKRRRVIVARF*PECVHKIVCSLL 175
           SCL+       AAF+C   +  NLF   + K  QS     + I+ R  P C+        
Sbjct: 70  SCLSVHHIHGLAAFLCHMSTQRNLFKPVIVKSNQSHKDTAKHILLRLHPACIRGFCLRHH 129

Query: 176 RER 184
           R+R
Sbjct: 130 RQR 132


>SB_39788| Best HMM Match : Ricin_B_lectin (HMM E-Value=6.4e-14)
          Length = 784

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 432 ILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTXCIWTSW 605
           + W+      Y+ +       NALFL I+I S  +   T   +  ++  L+ C+  SW
Sbjct: 112 LFWEVLRAVMYKRSPRFTHACNALFLVILIASGIWAGSTRGASTGFVRFLSDCLVVSW 169


>SB_32967| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 593 DAXRERHNVINCRCECTQNVETAQD 519
           D  R RH+V    C CT    TA+D
Sbjct: 39  DTDRFRHDVFTTTCSCTLTYRTAED 63


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 439 GKRMRWQIMKLPHTQFSTITHFS*LLSS 522
           GK+MR  + K P T F T+T  S LL S
Sbjct: 757 GKQMRGVMSKKPQTVFDTLTEVSRLLYS 784


>SB_33764| Best HMM Match : DUF454 (HMM E-Value=8.8)
          Length = 124

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 139 LKSCNNNSSSFVKALLFFPDIFTK*VTLTFTNTNKSCVL 23
           + S +++SSSF+  ++   +     +T+T TNTN S ++
Sbjct: 77  VNSPSSSSSSFIITIVIIINNKNNIITITVTNTNSSSII 115


>SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)
          Length = 383

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 139 LKSCNNNSSSFVKALLFFPDIFTK*VTLTFTNTNKSCVL 23
           + S +++SSSF+  ++   +     +T+T TNTN S ++
Sbjct: 336 VNSPSSSSSSFIITIVIIINNKNNIITITVTNTNSSSII 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,630,388
Number of Sequences: 59808
Number of extensions: 372705
Number of successful extensions: 870
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)