Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g06
(619 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118492-1|AAM49861.1| 190|Drosophila melanogaster LD05267p pro... 236 2e-62
AE014134-1722|AAF52827.1| 190|Drosophila melanogaster CG5885-PA... 236 2e-62
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P... 31 1.6
DQ305404-1|ABD58936.1| 594|Drosophila melanogaster wntless isof... 29 6.6
AY060600-1|AAL28148.1| 594|Drosophila melanogaster GH01813p pro... 29 6.6
AE014296-1921|AAF50085.2| 594|Drosophila melanogaster CG6210-PA... 29 6.6
AE014296-1920|AAN11905.1| 562|Drosophila melanogaster CG6210-PB... 29 6.6
>AY118492-1|AAM49861.1| 190|Drosophila melanogaster LD05267p
protein.
Length = 190
Score = 236 bits (578), Expect = 2e-62
Identities = 111/171 (64%), Positives = 137/171 (80%), Gaps = 4/171 (2%)
Frame = +3
Query: 81 SGKNNKA----FTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEIST 248
SGK K FTKEEELLLQDFSRNVSTKSSALFYGNAFIVSA+PIWLFWR+H++++
Sbjct: 3 SGKQQKVQSSGFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAVPIWLFWRIHNMDLWP 62
Query: 249 AIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDE 428
+ I F+LVTAAST+L+A AY+N KFQLKH ++R++ DDKK++RKEKDE
Sbjct: 63 SSILFVLVTAASTYLMATAYKNIKFQLKHKIAGRREEAVTREVNRQVGDDKKVTRKEKDE 122
Query: 429 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSL 581
RILWKKNEVADYEATT+SIFYNNA++L ++I SF+IL+ TP +NYI S+
Sbjct: 123 RILWKKNEVADYEATTFSIFYNNAIYLAVIIFISFFILKNSTPFINYIFSV 173
>AE014134-1722|AAF52827.1| 190|Drosophila melanogaster CG5885-PA
protein.
Length = 190
Score = 236 bits (578), Expect = 2e-62
Identities = 111/171 (64%), Positives = 137/171 (80%), Gaps = 4/171 (2%)
Frame = +3
Query: 81 SGKNNKA----FTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEIST 248
SGK K FTKEEELLLQDFSRNVSTKSSALFYGNAFIVSA+PIWLFWR+H++++
Sbjct: 3 SGKQQKVQSSGFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAVPIWLFWRIHNMDLWP 62
Query: 249 AIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDE 428
+ I F+LVTAAST+L+A AY+N KFQLKH ++R++ DDKK++RKEKDE
Sbjct: 63 SSILFVLVTAASTYLMATAYKNIKFQLKHKIAGRREEAVTREVNRQVGDDKKVTRKEKDE 122
Query: 429 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSL 581
RILWKKNEVADYEATT+SIFYNNA++L ++I SF+IL+ TP +NYI S+
Sbjct: 123 RILWKKNEVADYEATTFSIFYNNAIYLAVIIFISFFILKNSTPFINYIFSV 173
>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
protein.
Length = 23015
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 560 CRCECTQNVE-TAQDDNSQEKCVIVEN*VCGSFIIC 456
CR EC N + TA S+ KCV N +CG + IC
Sbjct: 11595 CRRECENNDDCTAVQACSRFKCVDPCNNICGDYAIC 11630
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 563 NCRCECTQNVETAQDDNS-QEKCVIVEN*VCGSFIICHLI 447
NCR EC + E AQD + E+C CG+ +C ++
Sbjct: 10416 NCRPECMSSSECAQDKSCLNERCKDPCPGTCGNNALCRVV 10455
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 566 INCRCECTQNVETAQDDNS-QEKCVIVEN*VCGSFIICHL 450
+ CR EC N + A+D Q+KC CG +CH+
Sbjct: 19757 VGCRPECVLNTDCARDKACIQQKCKNPCPGTCGLQALCHV 19796
>DQ305404-1|ABD58936.1| 594|Drosophila melanogaster wntless isoform
A protein.
Length = 594
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 192 VSAIPIWLFWRVHSLEISTAIIWFILV--TAASTWL-LALAYRNTKFQLKH 335
V I IW + RVH L+ S A++ ++L+ AA T+L L L Y + +++ +
Sbjct: 252 VVGIMIWFWRRVHLLQRSPALLEYMLIYLGAALTFLNLPLEYLSLVYEMPY 302
>AY060600-1|AAL28148.1| 594|Drosophila melanogaster GH01813p
protein.
Length = 594
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 192 VSAIPIWLFWRVHSLEISTAIIWFILV--TAASTWL-LALAYRNTKFQLKH 335
V I IW + RVH L+ S A++ ++L+ AA T+L L L Y + +++ +
Sbjct: 252 VVGIMIWFWRRVHLLQRSPALLEYMLIYLGAALTFLNLPLEYLSLVYEMPY 302
>AE014296-1921|AAF50085.2| 594|Drosophila melanogaster CG6210-PA,
isoform A protein.
Length = 594
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 192 VSAIPIWLFWRVHSLEISTAIIWFILV--TAASTWL-LALAYRNTKFQLKH 335
V I IW + RVH L+ S A++ ++L+ AA T+L L L Y + +++ +
Sbjct: 252 VVGIMIWFWRRVHLLQRSPALLEYMLIYLGAALTFLNLPLEYLSLVYEMPY 302
>AE014296-1920|AAN11905.1| 562|Drosophila melanogaster CG6210-PB,
isoform B protein.
Length = 562
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 192 VSAIPIWLFWRVHSLEISTAIIWFILV--TAASTWL-LALAYRNTKFQLKH 335
V I IW + RVH L+ S A++ ++L+ AA T+L L L Y + +++ +
Sbjct: 252 VVGIMIWFWRRVHLLQRSPALLEYMLIYLGAALTFLNLPLEYLSLVYEMPY 302
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,119,163
Number of Sequences: 53049
Number of extensions: 570442
Number of successful extensions: 1258
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -