Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g06
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical ...   140   5e-34
AF016445-1|AAC69057.2|  367|Caenorhabditis elegans Serpentine re...    30   1.2  
Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81571-3|CAB04613.1|  352|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    29   2.7  
AL117195-20|CAB60768.1|  388|Caenorhabditis elegans Hypothetical...    28   4.6  
Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    28   6.1  
U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL034364-2|CAA22252.1|  630|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF039049-7|AAB94243.2|  300|Caenorhabditis elegans Serpentine re...    28   6.1  
Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U64858-8|AAB18286.3|  288|Caenorhabditis elegans Serpentine rece...    27   8.1  
AF022985-2|AAB69972.2|  195|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical...    27   8.1  

>AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.2 protein.
          Length = 178

 Score =  140 bits (340), Expect = 5e-34
 Identities = 69/158 (43%), Positives = 102/158 (64%)
 Frame = +3

Query: 105 TKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAAS 284
           TKEEELLL  +S   STK +  FY NA I+S  P++LF+ VH +EI  +++ + L    +
Sbjct: 5   TKEEELLLSSYSATSSTKGNLFFYLNALIISIAPLYLFYGVHQMEIQDSLVVWGLSAVGT 64

Query: 285 TWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDERILWKKNEVADY 464
            +LL+LA +N K  LKH             +S + A DKKM+ KEK+ER L++KNEVAD 
Sbjct: 65  AYLLSLACKNQKCLLKHQIVMKRGSAVEREISGQYAADKKMTVKEKEERALFRKNEVADT 124

Query: 465 EATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVS 578
           E+T  S+FY N+L+LTI+++S+F++L    P  N ++S
Sbjct: 125 ESTYLSVFYTNSLYLTIMLVSAFFLLANVAPVFNLLIS 162


>AF016445-1|AAC69057.2|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein132 protein.
          Length = 367

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 399 KKMSRKEKDERILWKKNEVADYEATTYSIFYNNALF 506
           K++ + EK  ++    N+  DY  TT  +FYN   F
Sbjct: 246 KEIRKAEKRRKVSTSFNKTKDYRRTTQLVFYNTIFF 281


>Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical
           protein M01G12.6 protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 2/122 (1%)
 Frame = +3

Query: 147 VSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQ 326
           VS     LF   +FI++ I          L +  +I+    +    TW + ++Y N   +
Sbjct: 220 VSIAFYGLFQLLSFILALITYHPNLETSPLNLYRSILNLYYMPFIWTWAVTISYSNRVQK 279

Query: 327 LKHXXXXXXXXXXXXXMSRKLAD--DKKMSRKEKDERILWKKNEVADYEATTYSIFYNNA 500
           L               +    A    K+M +  +++R L    +  DY  TT  +FYN  
Sbjct: 280 LLEEYKNGLEIIIPCLLFPIFAGLLVKEMHKATENQRRLTSSKKTIDYNKTTRLVFYNTL 339

Query: 501 LF 506
            F
Sbjct: 340 FF 341


>Z81571-3|CAB04613.1|  352|Caenorhabditis elegans Hypothetical
           protein M01G12.4 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 399 KKMSRKEKDERILWKKNEVADYEATTYSIFYNNALF 506
           K+M +  +++R L    +  DY  TT  +FYN   F
Sbjct: 239 KEMHKATENQRRLTSSKKTIDYNKTTRLVFYNTLFF 274


>Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK1058.3 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +3

Query: 63  TYLVKMSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFW 221
           T  +K      K F K  +++L D+    + K   +   N      +P W FW
Sbjct: 178 TLPMKKHESQKKHFEKHGKVMLMDYLEQETLKKERIIMRNEHWTWLVPYWAFW 230


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 200 NSNLVVLEGTFIGNKHRNYLVYPSN 274
           ++NL++ +  FIGN   N LVYPS+
Sbjct: 581 SANLIIDDPIFIGNVPNNSLVYPSS 605


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 611 VEPR-SPDAXRERHNVINCRCECTQNVE 531
           ++P  SP+   ER ++++ RCEC  N E
Sbjct: 287 IDPHVSPNTVMERADIVHGRCECMHNTE 314


>AL117195-20|CAB60768.1|  388|Caenorhabditis elegans Hypothetical
           protein Y57A10A.27 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 45  FVKVKVTYLVKMSGKNNKAFTKEEELLLQDFSRNVSTKSSAL 170
           F+KV +T L +    + K+  K  ELL++   R  STK+SAL
Sbjct: 10  FLKVDLTRLAEDDETHQKSTKKHTELLIELIDRK-STKASAL 50


>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 617 WRVEPRSPDAXRERHNVINCRCE 549
           WR EPR+     E +N   C CE
Sbjct: 123 WRFEPRNEREIEEAYNAGKCHCE 145


>U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical
           protein F37A4.3 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +3

Query: 402 KMSRKEKDERILWKKNEVADYEATTYSIFYNNALFLTI 515
           ++ +  +++++ W     A+YEA  +  ++N +LFLT+
Sbjct: 15  RVGKLMRNDKLAWS----AEYEAKKFKFYHNTSLFLTL 48


>AL034364-2|CAA22252.1|  630|Caenorhabditis elegans Hypothetical
           protein W06D4.4 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 117 ELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAII 257
           E+L       VS++   +   N    +AIP+W+ W    + +ST ++
Sbjct: 530 EILRFPIDGRVSSQKCVVNIDNMSSSNAIPMWMEWEFGGINLSTGLL 576


>AF039049-7|AAB94243.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein63 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
 Frame = -3

Query: 512 SQEKCVIVEN*V-----CGSFI--ICHLILFPQDSFVLFFSAHFFIISKLPGHFTGNSIL 354
           SQ KC+I+ + +      G F   ICH     Q  F+ F ++   +I    G F  NS++
Sbjct: 118 SQTKCLILVSWMYSLTYAGLFYLRICHFRFDEQVQFLTFSNSRICMIVGWNGDFIKNSVI 177

Query: 353 PAHSNTVLQLELSVTVGKSQQ 291
            A    ++ L  +VT+ KS+Q
Sbjct: 178 VA----IIMLLDTVTIMKSRQ 194


>Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical
           protein R05H5.6 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 9   VLPLNSTQLLFVFVKVKVTYLVKMSGKNNKA--FTKEEELLLQDFSRNVS 152
           +L +NS  L+F +  VK+  ++K   +N+ +  +  EE ++   FS  +S
Sbjct: 188 LLAINSVNLVFNYFLVKINTILKEKWRNSLSTRYQMEENIITTKFSTFIS 237


>U64858-8|AAB18286.3|  288|Caenorhabditis elegans Serpentine
           receptor, class t protein25 protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +3

Query: 432 ILWKKNEVA---DYEATTYSIFYNN-ALFLTIVILSSFYILRTFTPTVNYIVSLTXCIW 596
           ++WK  +     D  + +Y I Y + A+     + SS Y++  F     +I+ L   +W
Sbjct: 181 LIWKARKTGNSHDLSSQSYQILYQSIAVCFINQVSSSVYVIMNFVLVPEWIIVLAQLLW 239


>AF022985-2|AAB69972.2|  195|Caenorhabditis elegans Hypothetical
           protein T15B7.17 protein.
          Length = 195

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +3

Query: 459 DYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTXCIWTSWL 608
           DY A+   IFY N LFL I +         F  +VNY  SL+      W+
Sbjct: 66  DYYASLMRIFYANKLFLEIAV-------NKFLKSVNYQTSLSGISSYLWV 108


>AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical
           protein Y54G2A.27 protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 485 FLQ*RTFPDYCHLEQFLH---SAYIHTYS*LHCVSH 583
           +LQ    P  C L   +H   S+YI+ YS LH +SH
Sbjct: 63  YLQMLFRPSVCPLHPSIHLSSSSYIYIYSQLHMLSH 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,604
Number of Sequences: 27780
Number of extensions: 293938
Number of successful extensions: 802
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)