Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g06
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.3  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +3

Query: 177 GNAFIVSAIPIWLFWRVHSLEIST 248
           G+ +I   + ++ +WR+++  +ST
Sbjct: 254 GSFYIPMLVMLFFYWRIYNAAVST 277


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -3

Query: 617 WRVEPRSPDAXRERHNVINCRCE 549
           W VEP      R +H  ++C+ +
Sbjct: 712 WIVEPTDVSVERNKHVALHCQAQ 734


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -3

Query: 617 WRVEPRSPDAXRERHNVINCRCE 549
           W VEP      R +H  ++C+ +
Sbjct: 708 WIVEPTDVSVERNKHVALHCQAQ 730


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 186 FIVSAIPIWLFWRVHSLEIS 245
           F+ S  P W FW   S E S
Sbjct: 21  FVTSHRPAWWFWTATSHEAS 40


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 6   VVLPLNSTQLLFVFVKVKVTYLV 74
           +VLPL +  LLF F+   V+ LV
Sbjct: 291 LVLPLIAKYLLFTFIMNTVSILV 313


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/26 (26%), Positives = 10/26 (38%)
 Frame = +3

Query: 528 SFYILRTFTPTVNYIVSLTXCIWTSW 605
           +FY    F P +  + S     W  W
Sbjct: 301 AFYFTTVFIPGIILVTSSFITFWLEW 326


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/26 (26%), Positives = 10/26 (38%)
 Frame = +3

Query: 528 SFYILRTFTPTVNYIVSLTXCIWTSW 605
           +FY    F P +  + S     W  W
Sbjct: 270 AFYFTTVFIPGIILVTSSFITFWLEW 295


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/26 (26%), Positives = 10/26 (38%)
 Frame = +3

Query: 528 SFYILRTFTPTVNYIVSLTXCIWTSW 605
           +FY    F P +  + S     W  W
Sbjct: 321 AFYFTTVFIPGIILVTSSFITFWLEW 346


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/26 (26%), Positives = 10/26 (38%)
 Frame = +3

Query: 528 SFYILRTFTPTVNYIVSLTXCIWTSW 605
           +FY    F P +  + S     W  W
Sbjct: 270 AFYFTTVFIPGIILVTSSFITFWLEW 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,465
Number of Sequences: 438
Number of extensions: 3922
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)