Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g05
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0250 + 27153048-27154453,27154546-27154885 99 3e-21
03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654... 65 5e-11
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593... 41 0.001
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404... 30 1.4
07_03_0756 - 21272122-21272784 30 1.8
06_01_0386 - 2767806-2767955,2768150-2768239,2768317-2768373,276... 29 4.1
09_04_0604 + 18899326-18899743,18900507-18900570,18901799-18901946 28 7.2
06_01_0560 - 3977456-3977527,3978069-3978182,3978264-3978335,397... 28 7.2
07_03_0538 + 19231318-19231382,19231652-19232390,19232468-192325... 27 9.6
07_03_0254 + 15857809-15858018,15858151-15858264,15859809-158600... 27 9.6
03_06_0582 - 34891613-34891795,34892407-34892466,34893134-348932... 27 9.6
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 98.7 bits (235), Expect = 3e-21
Identities = 52/127 (40%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
Frame = +2
Query: 269 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRS 448
R KR+K+A+LLGY G Y GMQ+NPG +TI + + D + + R+
Sbjct: 45 RYKRRKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARA 104
Query: 449 SRTDKGVSAAEQVVSLKLPLE--VNVEEINKRLPETIKVFAVKRVTNRFNSKSKCNARSY 622
+RTDKGVSAA QVVS + ++ V + +N +L I+ F RVTN FN+K C+ R Y
Sbjct: 105 ARTDKGVSAAAQVVSGRFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRY 164
Query: 623 SYTLPTY 643
Y LP +
Sbjct: 165 VYLLPVF 171
>03_02_0938 -
12563250-12563681,12564098-12564514,12565333-12565477,
12565574-12565722,12565836-12565948,12566423-12566458,
12566558-12566816
Length = 516
Score = 64.9 bits (151), Expect = 5e-11
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Frame = +2
Query: 263 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQ---TIXXXXXXXXXXXXYITQEDFENAQNA 433
+E ++K++ + +GY G EY G+Q+ + TI I + ++ Q
Sbjct: 66 WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125
Query: 434 QFQRSSRTDKGVSAAEQVVSLKLPLEVNVEE-----------INKRLPETIKVFAVKRVT 580
++RSSRTDKGV + ++SLK+ + E IN LP+ ++VF+V
Sbjct: 126 GWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQ 185
Query: 581 NRFNSKSKCNARSYSYTLP 637
F+ + +C R Y Y LP
Sbjct: 186 RSFDVRRECLYREYLYLLP 204
>06_03_1024 -
26958473-26958661,26958750-26958815,26959234-26959303,
26959526-26959773,26959938-26960029,26960726-26960871,
26961001-26961185,26961721-26961838,26961948-26962087
Length = 417
Score = 40.7 bits (91), Expect = 0.001
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Frame = +2
Query: 269 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR- 445
R +R ++L Y G + G Q+ PG+ T+ + A++ +
Sbjct: 117 RWERVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGC 176
Query: 446 ---SSRTDKGVSAAEQVVSL----KLPLEVNVEE-INKRLPETIKVFAVKRVTNRFNSKS 601
+ RTDKGV+A +QV S K ++++ INK P+ ++ V +V+ F+
Sbjct: 177 AVVAGRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINKAAPDKLRPLHVSQVSREFHPNF 236
Query: 602 KCNARSYSYTLP 637
R Y Y P
Sbjct: 237 AAKWRRYLYIFP 248
>03_03_0156 +
14939355-14939435,14939559-14939624,14940331-14940414,
14940796-14940875,14941313-14941358,14941456-14941566,
14942224-14942290,14942615-14942630,14942871-14942931,
14943015-14943145,14943243-14943360,14944053-14944176,
14944517-14944618,14944717-14944785,14946250-14946329
Length = 411
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 437 FQRSSRTDKGVSAAEQVVSLKL 502
+ R RTDKGVSA QV+SL L
Sbjct: 141 YSRCGRTDKGVSATGQVISLFL 162
>07_03_0756 - 21272122-21272784
Length = 220
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 212 GVCCTSLIAYSALYRLTYFLHL 147
GVCC LI + AL+++ FLHL
Sbjct: 187 GVCCFHLIDWLALFQVVRFLHL 208
>06_01_0386 -
2767806-2767955,2768150-2768239,2768317-2768373,
2768477-2768533,2768610-2769389
Length = 377
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 621 YERALHLDLELNLFVTLLTANTLIVSGNLLFISSTLTSKGSLSETTCSA 475
YE+ +H+DL+ N +T + N + NLL LS+ CS+
Sbjct: 326 YEKLIHVDLDSNT-ITNMICNANLKGHNLLHTRELKKKASVLSKQACSS 373
>09_04_0604 + 18899326-18899743,18900507-18900570,18901799-18901946
Length = 209
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 245 LEVWSPNRDVPGVCCTSLIAYSALYRLTYFLHLSLRRQ 132
L +W R P VC + +AY A Y+L+ + LRRQ
Sbjct: 92 LALWQLRRAAPSVCLDAALAY-AFYKLS-VMAADLRRQ 127
>06_01_0560 -
3977456-3977527,3978069-3978182,3978264-3978335,
3978428-3978497,3978608-3978705,3978791-3978992,
3979074-3979141,3979960-3980358
Length = 364
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = -3
Query: 233 SPNRDVPGVCCTSLIAYSALYRLTYFLHLSLRRQLPLRTAS 111
+P R G LI+ SA Y LTY LS R LPL TAS
Sbjct: 3 APCRGSRGALPLLLISLSAAY-LTYTALLSSRSLLPLPTAS 42
>07_03_0538 +
19231318-19231382,19231652-19232390,19232468-19232516,
19232600-19232664,19232774-19232828,19234107-19234225,
19234346-19234412,19235316-19235437,19235521-19235790
Length = 516
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +2
Query: 404 QEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVTN 583
Q + E + Q + +R + V AAE LKL E+ ++ +R + + +K+ +
Sbjct: 374 QLEKERLEKRQQEEKARIEAQVKAAEAAAQLKLDEEMRMKREQERRAARLALHMMKKTVD 433
Query: 584 RFNS 595
NS
Sbjct: 434 IDNS 437
>07_03_0254 +
15857809-15858018,15858151-15858264,15859809-15860010,
15860245-15860319,15860406-15860498,15860554-15860636,
15861067-15861180,15861632-15861746,15861840-15862030,
15862102-15862218,15862514-15862594,15862729-15862964,
15863219-15863258,15863393-15863968
Length = 748
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 243 GGLVSQSRCARRLLYLVNSLFGTISIDL 160
GGL+S S CA +LLY V I+ DL
Sbjct: 372 GGLLSYSTCAEQLLYEVGDPANYITPDL 399
>03_06_0582 -
34891613-34891795,34892407-34892466,34893134-34893280,
34893502-34893657,34893745-34893828,34893907-34893995,
34894575-34894689,34894776-34894899,34895080-34895219,
34895868-34895929,34896042-34896108,34896185-34896295,
34896868-34896945,34897074-34897274,34897492-34897563,
34897630-34897693,34898084-34898154,34898328-34898474
Length = 656
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 422 AQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRL 541
A+NA+ + +T +G AAEQ K LEV+V E+ ++L
Sbjct: 569 ARNAELTKELQTVRGQLAAEQSRCFK--LEVDVAELRQKL 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,890,142
Number of Sequences: 37544
Number of extensions: 303905
Number of successful extensions: 842
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -