Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g05
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28) 35 0.049
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) 31 0.60
SB_34244| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17) 29 3.2
SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017) 29 4.2
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35) 28 5.6
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_40970| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28)
Length = 503
Score = 35.1 bits (77), Expect = 0.049
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Frame = +2
Query: 230 ETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQE 409
++KP E + R +++A+ L Y G + +G + + +
Sbjct: 65 KSKPRKEFD--FSRYNTRRIALRLSYLGWDMHGFASQEKIDNTVEAHLFDALIKACLVK- 121
Query: 410 DFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVN---------------------VEE 526
+ ++ + R RTDKGVSA QV+SL + ++ ++E
Sbjct: 122 ---SRESCSYSRCGRTDKGVSAFGQVISLNVRTNLDKGPGVILRQESSVGRDTKGKTMKE 178
Query: 527 I------NKRLPETIKVFAVKRVTNRFNSKSKCNARSYSYTLPT 640
I NK LP+ I+V A V F+++ C+ R Y Y P+
Sbjct: 179 ILYVDILNKVLPKEIRVLAWAPVELDFDARFSCSYRKYKYLFPS 222
>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 32.7 bits (71), Expect = 0.26
Identities = 23/96 (23%), Positives = 43/96 (44%)
Frame = +2
Query: 26 VAGKVQEDNCKREKHGNS*KNILAITSARLLSVMEAADVTKDEENKSIDIVPNKLLTRYN 205
+ + + KR+ H K S + + E T +++N+ D + K +N
Sbjct: 300 ITNRGHNEGNKRKGHNERRKETEPKESEKRNKLTELDGATHNKQNE--DKIDEKNENEHN 357
Query: 206 KRRAHRDWETKPPGEIKKPYERIKRKKMAMLLGYSG 313
K H + ++ G++ K ERI++K+ A G SG
Sbjct: 358 KLNEHCEGDSHNEGKMDKENERIEQKEDATKSGASG 393
>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
Length = 1399
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 110 RLLSVMEAADVTKDEENKSIDIVPNKLLTRYNKRRAHR--DWETKPPGE 250
R SV+ A DV EEN +++IV ++++ + RRA D T PP +
Sbjct: 1106 RYASVV-ATDVPAGEENNTVEIVTDEIVVKVESRRAKTLYDGHTFPPND 1153
>SB_34244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 572 RVTNRFNSKSKCNARSYSYTLPTY 643
+ T F+ K C+AR+Y Y PT+
Sbjct: 3 KTTKAFDCKQNCSARTYEYLTPTF 26
>SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 5 RRHSLLVVAGKVQEDNCKREKH 70
RRH +LV+ G V DN REK+
Sbjct: 339 RRHHVLVLPGDVMHDNADREKY 360
>SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17)
Length = 735
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 540 NLLFISSTLTSKGSLSETTCSAADTPLSVLELRWN 436
+L+F S+ L+ +GS + A++T L L+L WN
Sbjct: 440 SLIFHSNNLSDQGSRLLSEALASNTALETLDLSWN 474
>SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)
Length = 453
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 242 EVWSPNRDVPGVCCTSLIAYSALYRLTYFLHLS 144
+ +SP D + SL+ +SA+YRL+YF LS
Sbjct: 378 DTFSPKPDA--IFIPSLVLFSAVYRLSYFCALS 408
>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
Length = 1078
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 561 NTLIVSGNLLFISSTLTSKGSLSETTCSAADTPLSVLELRWNCAF 427
NT +VS I +TL S + + T +ADT L ++ L W +F
Sbjct: 379 NTTMVSS----IVTTLHSSANTASTDGPSADTSLQIISLEWTNSF 419
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 35 KVQEDNCKREKHGNS*KNILAITSARLLSVMEAADVTKDEENKSID 172
K+QE+ KRE+ K + R +SV E + KDE KS+D
Sbjct: 1324 KLQEEQAKREERNKLFKEL----KQRKISVDEEVEQAKDELMKSLD 1365
>SB_40970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +2
Query: 149 DEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKMAM 295
D + + +++ + + ++R + ET P EIK+P R+ +K+ +
Sbjct: 155 DMDARKVEMCEKRSMEPVRRKRYLEELETSPGNEIKRPRPRLDFEKVRL 203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,064,375
Number of Sequences: 59808
Number of extensions: 375815
Number of successful extensions: 1056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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