Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g05
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = +2

Query: 452 RTDKGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVTNRFNSKSKCN 610
           R D G++       L  P E ++  +NK     +  +  +++  R+N +  CN
Sbjct: 200 REDIGINLHHWHWHLVYPFEGDIRIVNKDRRGELFYYMHQQIMARYNCERLCN 252


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 275 KRKKMAMLLGYSGVEYYGMQRNPGVQTI 358
           ++KK   L+G  G+   G+Q N   +TI
Sbjct: 92  QKKKKRSLMGAQGLSIRGLQINHEDETI 119


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 245 GEIKK-PYERIKRKKMAMLLGYSGVEYYGMQRNPGVQT 355
           G IK   YE ++      L G +G+E+ G  +N  +Q+
Sbjct: 297 GPIKDIDYENVQSLYQPHLRGLNGLEFAGRPQNLQLQS 334


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 203 CTSLIAYSALYRLTYFLHLSLRRQL 129
           C  + + SALYRL  +L     R +
Sbjct: 28  CKDITSTSALYRLKLYLFCDYDRDI 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,984
Number of Sequences: 438
Number of extensions: 3556
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)