Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g05
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20370.1 68414.m02541 tRNA pseudouridine synthase family prot...    97   7e-21
At1g76120.2 68414.m08840 tRNA pseudouridine synthase family prot...    85   4e-17
At1g76120.1 68414.m08839 tRNA pseudouridine synthase family prot...    85   4e-17
At2g30320.1 68415.m03690 tRNA pseudouridine synthase family prot...    72   4e-13
At5g35400.1 68418.m04207 tRNA pseudouridine synthase family prot...    39   0.002
At1g34150.1 68414.m04236 tRNA pseudouridine synthase family prot...    36   0.017
At5g57020.1 68418.m07117 myristoyl-CoA:protein N-myristoyltransf...    30   1.1  
At1g47980.1 68414.m05344 expressed protein                             30   1.1  
At3g45650.1 68416.m04931 proton-dependent oligopeptide transport...    29   3.5  
At3g06950.1 68416.m00825 tRNA pseudouridine synthase family prot...    28   4.6  
At2g27980.1 68415.m03391 expressed protein                             28   4.6  
At2g16280.1 68415.m01864 very-long-chain fatty acid condensing e...    27   8.0  
At1g65790.1 68414.m07466 S-receptor protein kinase, putative sim...    27   8.0  

>At1g20370.1 68414.m02541 tRNA pseudouridine synthase family protein
           similar to SP|Q9WU56 tRNA pseudouridine synthase A (EC
           4.2.1.70) (Uracil hydrolyase) {Mus musculus}; contains
           Pfam profile PF01416: tRNA pseudouridine synthase
          Length = 549

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
 Frame = +2

Query: 269 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRS 448
           + +R+K+A++  + GV Y GMQ+NPG +TI             +   D    +N ++ RS
Sbjct: 54  KYRRRKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARS 113

Query: 449 SRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKVFAVKRVTNRFNSKSKCNARSY 622
           +RTDKGVSA  QVVS +  ++    VE +N +LP+ I+VF  KRV   F+SK  C+ R Y
Sbjct: 114 ARTDKGVSAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKFCDRRRY 173

Query: 623 SYTLPTY 643
            Y +P +
Sbjct: 174 VYLIPVF 180


>At1g76120.2 68414.m08840 tRNA pseudouridine synthase family protein
           similar to SP|Q9Y606 tRNA pseudouridine synthase A (EC
           4.2.1.70) (Uracil hydrolyase) {Homo sapiens}; contains
           Pfam profile PF01416: tRNA pseudouridine synthase
          Length = 356

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
 Frame = +2

Query: 281 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 460
           +K+A++  + GV Y GMQ+NPG +TI             + +      +   F RS+RTD
Sbjct: 22  QKVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTD 81

Query: 461 KGVSAAEQVVSLKLPLEV--NVEEINKRLPETIKVFAVKRVTNRFNSKSKCNARSYSYTL 634
           KGVSA  QVVS +  ++    V  +N  LP  I++F  K VT  F+SK  C+ R Y Y L
Sbjct: 82  KGVSAVGQVVSGRFIVDPLGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYVYLL 141

Query: 635 PTY 643
           P +
Sbjct: 142 PVF 144


>At1g76120.1 68414.m08839 tRNA pseudouridine synthase family protein
           similar to SP|Q9Y606 tRNA pseudouridine synthase A (EC
           4.2.1.70) (Uracil hydrolyase) {Homo sapiens}; contains
           Pfam profile PF01416: tRNA pseudouridine synthase
          Length = 463

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
 Frame = +2

Query: 281 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 460
           +K+A++  + GV Y GMQ+NPG +TI             + +      +   F RS+RTD
Sbjct: 22  QKVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTD 81

Query: 461 KGVSAAEQVVSLKLPLEV--NVEEINKRLPETIKVFAVKRVTNRFNSKSKCNARSYSYTL 634
           KGVSA  QVVS +  ++    V  +N  LP  I++F  K VT  F+SK  C+ R Y Y L
Sbjct: 82  KGVSAVGQVVSGRFIVDPLGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYVYLL 141

Query: 635 PTY 643
           P +
Sbjct: 142 PVF 144


>At2g30320.1 68415.m03690 tRNA pseudouridine synthase family protein
           similar to pseudouridine synthase [Schizosaccharomyces
           pombe] GI:6469502; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 510

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
 Frame = +2

Query: 263 YERIKRKKMAMLLGYSGVEYYGMQ---RNPGVQTIXXXXXXXXXXXXYITQEDFENAQNA 433
           +E  ++KK+ + +GY G +Y G+Q    +P ++TI             I   ++ +    
Sbjct: 57  WESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKI 116

Query: 434 QFQRSSRTDKGVSAAEQVVSLKLPLE-----------VNVEEINKRLPETIKVFAVKRVT 580
            + RSSRTDKGV +    +SLK+ +            V  + I+K LPE I+VF+V    
Sbjct: 117 GWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSN 176

Query: 581 NRFNSKSKCNARSYSYTLP 637
            RF+ + +C  R YSY LP
Sbjct: 177 RRFDPRRECTLRKYSYLLP 195


>At5g35400.1 68418.m04207 tRNA pseudouridine synthase family protein
           weak similarity to  SP|P07649 tRNA pseudouridine
           synthase A (EC 4.2.1.70) (Uracil hydrolyase)
           {Escherichia coli}; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 420

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
 Frame = +2

Query: 269 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR- 445
           R +R    ++L Y+G  + G Q+ P + T+               +      +    +  
Sbjct: 89  RWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGR 148

Query: 446 ---SSRTDKGVSAAEQVVSL---KLPLE-VNVEE-INKRLPETIKVFAVKRVTNRFNSKS 601
              + RTDKGVSA  QV S    +  +E + +E+ INK     ++V ++ +V+  F+   
Sbjct: 149 VLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNF 208

Query: 602 KCNARSYSYTLP 637
               R Y Y  P
Sbjct: 209 SAKWRRYLYIFP 220


>At1g34150.1 68414.m04236 tRNA pseudouridine synthase family protein
           similar to pseudouridine synthase 3 [Mus musculus]
           GI:9652099; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 446

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 22/201 (10%)
 Frame = +2

Query: 92  LAITSARLLSVMEAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYER 271
           L + +A+LLS + +    + E      +  +  L R  +RR  +  +   P  +      
Sbjct: 35  LEVENAKLLSQVSSCQCQQMEVKHDRSLSDSSSLVR--RRRVRKGDKNSIPSHL------ 86

Query: 272 IKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 451
           I ++ +A+ + Y G  +YG      ++               +   D    +++ + R  
Sbjct: 87  ISKRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGD---KKDSCYSRCG 143

Query: 452 RTDKGVSAAEQVVS------LKLP-----LEVN-----------VEEINKRLPETIKVFA 565
           RTDKGVS+  QV++      LK P      +VN           V  +N+ LP+ I+V  
Sbjct: 144 RTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDDIRVIG 203

Query: 566 VKRVTNRFNSKSKCNARSYSY 628
                  F+++  C AR Y Y
Sbjct: 204 WSPAPIDFHARFSCYAREYKY 224


>At5g57020.1 68418.m07117 myristoyl-CoA:protein
           N-myristoyltransferase 1 (NMT1) identical to
           N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana]
           GI:7339834
          Length = 434

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +2

Query: 122 VMEAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIK 256
           ++EA  + KD+   S++ +  +     ++ + H+ WET+P G+ K
Sbjct: 18  IVEANPLVKDDT--SLETIVRRFQDSMSEAKTHKFWETQPVGQFK 60


>At1g47980.1 68414.m05344 expressed protein
          Length = 315

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -2

Query: 129 SITDSKRALVMAKIFFYEFPCFSRLQLSSCTLPATTN 19
           ++T  +R+L+++ +  + F  F  LQ++SC   ATTN
Sbjct: 2   ALTKERRSLLVSMVLVFFFFNFHHLQVTSCPDQATTN 38


>At3g45650.1 68416.m04931 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 558

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 146 KDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPY 265
           KD  N+SI + P K    +N+    ++ E KP G I+ P+
Sbjct: 264 KDYHNESITM-PTKSFRFFNRAALKQEDEVKPDGTIRNPW 302


>At3g06950.1 68416.m00825 tRNA pseudouridine synthase family protein
           similar to SP|P07649 tRNA pseudouridine synthase A (EC
           4.2.1.70) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF01416: tRNA pseudouridine
           synthase
          Length = 323

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 5/122 (4%)
 Frame = +2

Query: 284 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 463
           K  +++ Y G  + G Q      TI             + +++       Q   + RTD 
Sbjct: 42  KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKEL------QLIGAGRTDA 95

Query: 464 GVSAAEQVVSLKLPLEVNVEE-----INKRLPETIKVFAVKRVTNRFNSKSKCNARSYSY 628
           GV A  QV     P      +     +N  LP+ I+V  +      F+++   +++ Y Y
Sbjct: 96  GVHAWGQVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRY 155

Query: 629 TL 634
            +
Sbjct: 156 QI 157


>At2g27980.1 68415.m03391 expressed protein
          Length = 1037

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 267 KGLREKKWLCCWGTPELNITVCNEIL 344
           K L E+KW C  G  E+N T+ N I+
Sbjct: 794 KELPEEKWFCSLGCEEINTTLGNLIV 819


>At2g16280.1 68415.m01864 very-long-chain fatty acid condensing
           enzyme, putative similar to fatty acid condensing enzyme
           CUT1 GI:5001734 from [Arabidopsis thaliana]
          Length = 512

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -3

Query: 140 RRQLP--LRTASVRLLWLKYFFMNSHAFLVCNYPLVLYL 30
           RR+LP  L++ +++ + L Y ++ +H F +C  PL+  L
Sbjct: 22  RRKLPNFLQSVNMKYVKLGYHYLITHLFKLCLVPLMAVL 60


>At1g65790.1 68414.m07466 S-receptor protein kinase, putative
           similar to similar to PIR|T05180|T05180 S-receptor
           kinase ARK3 precursor - [Arabidopsis thaliana]
          Length = 843

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 318 STPEYPSSIAIFFLLILSYGFLISPGGL 235
           S P Y  S  IF +LIL   F +SP  L
Sbjct: 3   SVPNYHHSFFIFLILILFLAFSVSPNTL 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,017
Number of Sequences: 28952
Number of extensions: 260808
Number of successful extensions: 890
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)