Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g04
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 34 0.022
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 33 0.030
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 28 1.5
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.5
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 27 1.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.9
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 27 3.4
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 26 5.9
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 26 5.9
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 25 7.9
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 25 7.9
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 7.9
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 33.9 bits (74), Expect = 0.022
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +1
Query: 172 LLTDVLNLRWMEFLKKIIKEARMLENYEMSYENIELSVNFKLNVDHLNINDVSHYAKDIL 351
LLTD+L L I R++ +E S EN L +NF + + HLNI V+H D+L
Sbjct: 1413 LLTDLLAA-----LTPRIDHPRVIRIFEKS-ENTPLILNFMVAIQHLNIQAVNHAYNDLL 1466
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 33.5 bits (73), Expect = 0.030
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +1
Query: 106 ECIKIFETAKEEYKKMDNVTKQLLTDVLN-LRWMEFLKKIIKEARMLENYEMSYENIELS 282
EC+ ++ +E + + + L L + E + ++ + LENY+ YE ++L
Sbjct: 1121 ECLNNIKSLTKELENKEEKCQNLSDASLKYIELQEIHENLLLKVSDLENYKKKYEGLQLD 1180
Query: 283 VNFKLNVDHLNINDVSHYAKDILKFNH 363
+ +VD N ++S +D L FNH
Sbjct: 1181 LEGLKDVD-TNFQELSKKHRD-LTFNH 1205
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2
Query: 102 KHPNYKNVSKY 70
KHPNYKN+ KY
Sbjct: 84 KHPNYKNIEKY 94
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 97 VFCECIKIFETAKEEYKKMDNVTKQLLTDVLNLRWMEFLKKIIKEARMLENYEMS 261
+F I FE AK ++ + N +L+TD LN+ ++ KE LE EMS
Sbjct: 505 LFLNAIYTFEYAKRKFPEALN--SRLVTDFLNIFLERGSVQLFKEIYQLEFREMS 557
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 659 ALFLMKSLIFXETSTPQSITHMSLFTTSGIIFNSSQVMYICF--SRIKNPIAPDILT 495
A F+MKS I S PQ+ + S + + NSS + F + + NP + ++LT
Sbjct: 311 ASFMMKSFIPSNRSHPQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLT 367
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 289 FKLNVDHLNINDVSHYAKDILKFNHCTSATEFDFSI 396
+KLNV+H I Y + FN C + +EF+FS+
Sbjct: 1180 YKLNVEHKIIT----YQNYEMTFNDCDAFSEFNFSL 1211
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 217 KIIKEARMLENYEMSYENIELSVNFKLNVDHLNI 318
K KEA +++NYE++ E + +++F N + N+
Sbjct: 7 KAAKEALVVKNYELAIEQSKKALSFDANNYNANV 40
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 196 RWMEFLKKIIKEARMLENYEMSYENIELSVNFKLNVDHLNI 318
R + L + E +L+ E+S+E+I + LN DHLNI
Sbjct: 436 RHAKLLDALAGEIALLQ--ELSHEHIVQYLGSNLNSDHLNI 474
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +1
Query: 205 EFLKKIIKEARMLENYEMSYEN--IELSVNFKLNVDHLNIND--VSHYAKDI 348
+FLK ++ + LE E SY++ + +K+N+ L I D VS+ KD+
Sbjct: 338 QFLKDLLSASPYLEYLEASYQSDLVAAIKKYKINLRSLIIIDEGVSNTVKDL 389
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 199 WMEFLKKIIKEARMLENYEMSYENIELSVNFKLNVDHLNINDVSHYAKDILK 354
W E+ K++ + +++ ++ Y NIE +LN I+ + H +D LK
Sbjct: 77 WKEYAIKVLDKKYIVKENKVKYVNIERDSMMRLN-GFPGISRLFHTFQDDLK 127
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 7.9
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +1
Query: 112 IKIFETAKEEYKKMDNVTKQLLTDVLNLRWMEFLKKIIKEARMLE-NYEMSYENIELSVN 288
+ ++ E N L T +LN + F K + K + + N + Y +LS N
Sbjct: 105 LTVYFVCNENIYMAPNAYTLLATRMLNATYC-FQKALTKIEKFPQYNPQEGYTYPKLS-N 162
Query: 289 FKLNVDHLNINDVSHYAKDILKFNHCTSATEFDFSI 396
L VDH N N+ + K+ N S + DFS+
Sbjct: 163 DNLEVDHSNTNEPADENKNQSIENADYSFSPEDFSV 198
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 286 NFKLNVDHLNINDVSHYAKDILKFNHCTSATEFDFSI 396
+F+L + L+ ND + +IL EFD+S+
Sbjct: 1011 DFELALSRLSTNDADYAILNILNLLTSNECDEFDYSV 1047
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,484
Number of Sequences: 5004
Number of extensions: 54669
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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