Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g04
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26...    31   0.66 
06_01_0093 - 776567-777335,777449-777747                               29   3.5  
09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323...    28   8.1  
06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568...    28   8.1  

>05_01_0038 +
           260080-260380,260852-261022,261764-261810,262266-262412,
           262495-262569,262826-262935,263032-263159,263368-263429,
           263599-263748,263827-263861,264083-264151,264538-264629,
           264718-264794,265434-265532
          Length = 520

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +1

Query: 67  LIF*YVFIVWVFCECIKIFETAKEEYKKMDNVTKQLLTDVLNL-RWMEFLKKIIKEARML 243
           L+  Y  + W   E IK+  +   E   M N  K ++T V N+ +  + L+ +  E   +
Sbjct: 211 LVLNYCGVTWELVEKIKVSFSCLSELHLMTNRIKAMMTPVGNIVQGFDTLRLLNLEDNHI 270

Query: 244 ENYEMSYENIELSVNFKLNVDHLNINDVSH 333
           ++++   E ++LS    L   HLN N + H
Sbjct: 271 DSWD---EIVKLSYLRSLEQLHLNKNMLKH 297


>06_01_0093 - 776567-777335,777449-777747
          Length = 355

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -2

Query: 681 YRNQVDYCFVSNEIVDLL*DVHTAEYYTHVALY----DVWNNFQLITSYVHLLFSHKESY 514
           + +  D    SN +V LL  +    YY HV+ Y    DV+   ++    +     H+E Y
Sbjct: 70  HHSSSDPMSASNPLVSLLPAMVLTSYYAHVSGYCLVVDVFTGAEVSPPRLPFSKDHEEIY 129

Query: 513 RSGYFNVP*INPSIYL 466
             G    P  +P+ +L
Sbjct: 130 FCGTLTAPITSPNSHL 145


>09_03_0125 -
           12531409-12531442,12531577-12531668,12531747-12532337,
           12532454-12532789,12532899-12533156,12533867-12533971,
           12534625-12534702,12535464-12535542,12535649-12535723,
           12535828-12535946,12536042-12537106
          Length = 943

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 385 DFSIPEFNVDIGQTRAELDIGGFKLALEINGRIYLRNVKISGAIGFFMREKQMYITCDEL 564
           DF +   N + G  RAEL++  FKL   ++G + L  V  +G I   + +    +  D +
Sbjct: 448 DFFMKFSNHNCGSPRAELNLETFKLRSSVSGTLQL--VDATGCIDVVIPDLPPNVCMDSI 505

Query: 565 KIIPD 579
             I D
Sbjct: 506 YEIND 510


>06_03_0272 +
           19053455-19053587,19054665-19056627,19056827-19056887,
           19056975-19057198,19057573-19057642,19058453-19058515
          Length = 837

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 120 IRNSKRRIQKNGQRYKTVADRRIKSPLDGIP*ENYKGSSDVGKL*NVLRKYRIKRQ 287
           IRN +        R + ++D   +SP+DGIP  +Y+  S V     +  KYR   +
Sbjct: 133 IRNVENADMMKSVRGRGISDISPRSPIDGIPPTSYQAESLVNY--QLQSKYRFSNR 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,786,132
Number of Sequences: 37544
Number of extensions: 288480
Number of successful extensions: 669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)