Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g04
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37468| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)                     30   1.5  
SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)                     30   2.0  
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_30318| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-07)                 28   6.2  
SB_35584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_37468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 9   YTIQNTDPVVEINYVFTTLINILIRFYSLGVL--RVH*NIRNSKRRIQKNGQRYKTVADR 182
           Y   NT+  V + ++ TTL   +I  Y    L  R H N+R +  + Q   Q Y  +  R
Sbjct: 25  YATPNTEQDVRLKFMCTTLEKAIINGYRAEALDIRAHLNLRKAISKYQAGSQTYAEIIIR 84


>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
          Length = 1998

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 115  KIFETAKEEYKKMDNVTKQLLTDVLNLRWMEFLKKIIKEARMLENYEMSYENIELSVNFK 294
            K FE  KEE+++     K++  D L+ +  +  +K+      LEN EM  E  EL    +
Sbjct: 1461 KGFEKEKEEFEEAFRKEKKIFQDELSKKDEDLAQKLQDLRTQLEN-EMEKEKAELQSRIE 1519

Query: 295  LNV 303
             N+
Sbjct: 1520 TNI 1522


>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
          Length = 1146

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 112 IKIFETAKEEYKKMDNVTKQLLTDVLNLRWMEFLKKIIKEARML 243
           +K  +  K+E+        QLL DV+N R +EF K+++ E   L
Sbjct: 202 VKAEDVKKDEWLSHHQGIYQLLRDVINKRAVEFEKEVLLETEKL 245


>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 230  SFIIFLRNSIQRRFNTSVSNCFVTLSIFLYSSFAVSNILMH 108
            S+  FL   + R F  ++S  + TLS+++    AVSNI ++
Sbjct: 996  SWFPFLLTRVLRVFGVNLSEIYYTLSVWILHCNAVSNIAIY 1036


>SB_30318| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-07)
          Length = 546

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/65 (18%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = -3

Query: 677 VIKSITALFLMKSLIFXETSTPQSITHMSLFTTSGIIFNSSQVMYICFSRI--KNPIAPD 504
           ++ +  A+F M + +   T+    +T+  L+TT+ +++ ++ ++Y+  + +   N +  D
Sbjct: 22  MLYTTNAMFYMTNAMLYMTNAMLYMTNAMLYTTNAMLYTTNAMLYVTNAMLYTTNAMLYD 81

Query: 503 ILTFL 489
           + ++L
Sbjct: 82  VFSYL 86


>SB_35584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 205 EFLKKIIKEARMLEN-YEMSYENIELSVNFKLNVD 306
           E +  +    RM+EN Y   Y+NI   +NF++N++
Sbjct: 169 EVVSTLCDVGRMMENAYPALYQNISEQLNFRINLE 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,334,886
Number of Sequences: 59808
Number of extensions: 362770
Number of successful extensions: 1053
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)