Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g04
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42820.1 68416.m04484 hypothetical protein hypothetical prote...    33   0.24 
At1g35770.1 68414.m04447 Ulp1 protease family protein contains P...    31   0.55 
At1g26360.1 68414.m03216 hydrolase, alpha/beta fold family prote...    31   0.55 
At3g55060.1 68416.m06115 expressed protein contains weak similar...    29   2.2  
At3g13160.1 68416.m01646 pentatricopeptide (PPR) repeat-containi...    29   2.2  
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    28   5.1  
At4g08340.1 68417.m01378 Ulp1 protease family protein contains P...    28   6.8  
At2g29060.1 68415.m03532 scarecrow transcription factor family p...    28   6.8  
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ...    27   8.9  

>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 906

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 292 KLNVDHLNINDVSHYAKDILKFNHCTSATEFDFSIP 399
           KL V+ L+   VS + +   KF+ CTS  EF F  P
Sbjct: 806 KLRVEVLDSKFVSLFCRQFTKFSRCTSKLEFQFPAP 841


>At1g35770.1 68414.m04447 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 968

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 292 KLNVDHLNINDVSHYAKDILKFNHCTSATEFDFSIPEFNV 411
           KL +  L++  VS   +   KF+ C S TEF F +P  ++
Sbjct: 813 KLRLKVLDLKFVSLLYRQFTKFSRCNSKTEFQFPLPLIDI 852


>At1g26360.1 68414.m03216 hydrolase, alpha/beta fold family protein
           similar to SP|Q40708 PIR7A protein {Oryza sativa},
           ethylene-induced esterase [Citrus sinensis] GI:14279437,
           polyneuridine aldehyde esterase [Rauvolfia serpentina]
           GI:6651393; contains Pfam profile PF00561: alpha/beta
           hydrolase fold
          Length = 444

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 226 KEARMLENYEMSYENIELSVNFKLNVDHLNINDVSHYAKDILKFNHCTSATE 381
           K   +LE +    + +EL+ +   ++D  NI  ++HY+K +L F      TE
Sbjct: 205 KTITLLEKHGFQVDAVELTGSGVSSIDTNNITSLAHYSKPLLHFFESLKPTE 256


>At3g55060.1 68416.m06115 expressed protein contains weak similarity
           to intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae];
           expression supported by MPSS
          Length = 896

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +1

Query: 124 ETAKEEYKKMDNVTKQLLTDVLNLRWMEFLKKIIKEARMLENYEMSYENIELSVNFKLNV 303
           E  K+  +K+D + K+L  + + L  +E   +   E+  LE   + +ENI L    K N 
Sbjct: 548 EVKKQPSEKLDQLVKKLQVEQVRLTGIELSLRREVESMKLETDSLRHENICLLNRLKGNG 607

Query: 304 DHLNI 318
             ++I
Sbjct: 608 QEIDI 612


>At3g13160.1 68416.m01646 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 394

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 563 NSSQVMYICFSRIK-NPIAPDILTFLK*IRPFISSANL 453
           N S+ M   F ++K N + PD+ TF   I+ F+S   L
Sbjct: 261 NKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKL 298


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 118 IFETAKEEYKKMDNVTKQLLTDVLNLR 198
           +FE A E+ KK D+  K  + DVL LR
Sbjct: 681 LFEDAVEDLKKRDHELKSQIKDVLKLR 707


>At4g08340.1 68417.m01378 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 988

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 292 KLNVDHLNINDVSHYAKDILKFNHCTSATEFDFSIPEFNVDIGQTRAELD 441
           KL VD L+   VS   +   KF+ C+S  +F F  P   +D+   R E D
Sbjct: 798 KLRVDVLDSKFVSLLFRLFPKFSRCSSKQDFQF--PPHLIDLFNGRGEPD 845


>At2g29060.1 68415.m03532 scarecrow transcription factor family
            protein 
          Length = 1336

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 223  IKEARMLENYEMSYENIELSVNFKLNVDHLNINDVSHYAKDILKFNHCTSATEFDFSI 396
            + + R+ +N+E  +E +  S  F  NV+   + D+  + K +L    C   T  D  I
Sbjct: 874  LDQLRVKKNHERDFEEVRSSKQFASNVEDSKVTDM--FDKVLLLDGECDPQTLLDSEI 929


>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
           contains Pfam:PF00320 GATA zinc finger domain
          Length = 470

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/74 (21%), Positives = 28/74 (37%)
 Frame = +1

Query: 178 TDVLNLRWMEFLKKIIKEARMLENYEMSYENIELSVNFKLNVDHLNINDVSHYAKDILKF 357
           T  + ++ M   KKI K     EN+ +   N+E    FK        ++ S     +   
Sbjct: 64  TQTVMIKGMSLNKKIPKRKPYQENFTVKRANLEFHTGFKRKALDEEASNRSSSGSVVSNS 123

Query: 358 NHCTSATEFDFSIP 399
             C  +  +D + P
Sbjct: 124 ESCAQSNAWDSTFP 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,558,389
Number of Sequences: 28952
Number of extensions: 261700
Number of successful extensions: 668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)