Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g02
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0411 + 8217324-8218172                                           31   0.91 
09_04_0442 - 17630039-17630782                                         28   6.4  
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     28   8.5  

>03_02_0411 + 8217324-8218172
          Length = 282

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 51  AGGGRALGTYVNRTSARYVGPPFTSQRWW 137
           +GGG  +G  V  T+AR++G      RWW
Sbjct: 210 SGGGEGVGCEVRMTTARWLGVQQQRLRWW 238


>09_04_0442 - 17630039-17630782
          Length = 247

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 125 RSKGWSYISRTRPVHVRSKRPPAACDSDYGPGYR 24
           R  GW    R RP  +RS+R      S  G G+R
Sbjct: 160 RRSGWRAWRRGRPARIRSRRRLMRLSSSSGAGHR 193


>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -1

Query: 158 PNACSLYPPPLRSKGWSYISRTRPVHVRSKRPPAACD 48
           PNA  +YPPP      SY     PV      PPA  D
Sbjct: 523 PNAPPMYPPPPYGYA-SYYPSVTPVQPPPPPPPAGAD 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,715,621
Number of Sequences: 37544
Number of extensions: 276975
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)