Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g01
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 104 1e-23
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 29 0.90
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 28 1.6
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 28 1.6
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.1
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 3.6
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 3.6
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 26 4.8
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 6.4
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 25 8.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.4
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 104 bits (250), Expect = 1e-23
Identities = 65/202 (32%), Positives = 112/202 (55%), Gaps = 13/202 (6%)
Frame = +1
Query: 46 PENEAT-IQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPK- 219
PE E+ I+ V+ + L VM I+KHC + S NM G L+G+ ++ L++++ F P
Sbjct: 10 PELESPPIERVELESLLVMNIIKHCRD-SFPNMGTI-GQLVGIDIDGVLQVSSSFESPSV 67
Query: 220 ---HDDTMDE-------EEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSL-LESQY 366
+ +++ + + M+ RL+ + HVGWY A V +FLS +E+QY
Sbjct: 68 LENEESAVNKSVSGKARQAHTEAMLNRLQYIGAVTGHVGWYLGAYVSSFLSSPFFVETQY 127
Query: 367 HYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLF 546
YQ + S+ +YD +S+ G L ++AY+LTP+ +A ++E +T +L + + N+
Sbjct: 128 AYQKANPNSIAFLYDLSQSSNGTLYMRAYQLTPEFMAAHEEKTWTASSLNSHNLTPSNVI 187
Query: 547 IEVPIVIRNSPLTNIMISELTE 612
E+PIVI NS L ++ L+E
Sbjct: 188 RELPIVIHNSHLATCLLHSLSE 209
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 28.7 bits (61), Expect = 0.90
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 172 VVENRLEITNCFPFPKHD----DTMDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFL 339
+ +NRLE N F FP D + EY M R+L +NV VG +S + ++
Sbjct: 7 IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNV----VGMTKSVLMSSYF 62
Query: 340 SLSLL 354
+L L+
Sbjct: 63 NLMLV 67
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -2
Query: 732 ELDRFLIQFINTFHETAKLSFENRCSTQIQK--LGSFLFRYHL-GELRDHYVS*W-RVPD 565
E++R L+ F+ F T K ++ C T + L F + + L L+D W RV +
Sbjct: 285 EIERKLLSFVMLFENTDKCLIDSECLTSKKSFTLNDFTYDFRLPWYLKDDSWKRWCRVKE 344
Query: 564 NNWH 553
+W+
Sbjct: 345 YSWN 348
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 261 HVQLVFLLIHGVVMLWKWEAVGNLQTVLND 172
+++ VFL IH ++ W+WE V + ++ D
Sbjct: 969 YLRTVFLRIHFLISEWRWEDVAQILFLIFD 998
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 175 RPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSS 59
R N +LP PP ++ +++ LF+S+ H+ + S
Sbjct: 768 RSNSAKLPYVPPSLTSLIDNAIQLFASMFCHQPPKVMES 806
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 139 MEVAQGALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNV 288
M+ + L GLV + +T + P H + + +++LD R RR+N+
Sbjct: 355 MDTTEELLSGLVKD----LTGSYKVPYHPEGPEGPKWELDFSRPWRRINM 400
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 382 IEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGY 534
+ + +VV YD K + F L+A TP+ E TPE L+++ + +
Sbjct: 737 VRKDIVVQYDMKPDSPRFQQLRAQITTPEI-----EKQSTPEILKDVDVDF 782
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 469 AIAMYKEGDYTPEALRNLKIGYENLFIEVPIVI 567
AIA+ ++G +T RN KI + ++ V IVI
Sbjct: 553 AIAIIEQGIFTRSGKRNRKIKWRKNYLRVLIVI 585
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 199 W*SPDGSQRPNQGELPEPPP 140
W + DGS NQ P PPP
Sbjct: 1868 WVNDDGSDLSNQAAPPPPPP 1887
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 502 PEALRNLKIGYENLFIEVPIVIRNSPLTNIMISELTEMIPEEEGSKFLDLGTASVL 669
P + N+ +++ +EV V PL I I L ++P E F + S+L
Sbjct: 288 PIPIYNVNTTFDHPTVEVKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLL 343
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 499 CNRLPCT*Q*PEV---SNDRPSKSRILWLISL 413
CN + C Q + SN +P +R+LWL+S+
Sbjct: 2947 CNAVSCFLQASSLLSSSNSKPLLTRVLWLLSV 2978
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,448
Number of Sequences: 5004
Number of extensions: 68430
Number of successful extensions: 195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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