Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g01
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)             143   2e-34
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        33   0.32 
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    30   1.7  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_40279| Best HMM Match : zf-MYM (HMM E-Value=0.66)                   29   3.9  
SB_31995| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_24366| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  

>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score =  143 bits (346), Expect = 2e-34
 Identities = 66/125 (52%), Positives = 92/125 (73%), Gaps = 4/125 (3%)
 Frame = +1

Query: 31  SARRAPENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFP 210
           S++ +P  +  I  VQ DGL V+KI+KHC EE  S  ++ QG LLGL+ +NRLEITNCFP
Sbjct: 6   SSKNSPSGQ--IDIVQVDGLTVLKIIKHCEEEGSSG-DLVQGVLLGLIQDNRLEITNCFP 62

Query: 211 FPKH----DDTMDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQYHYQT 378
           FP +    D+  D+  YQ+++MRRLR VN+DH HVGWYQS  +G++++ +LL+SQY YQ 
Sbjct: 63  FPSNKAGDDEDDDDVNYQMEVMRRLRAVNIDHLHVGWYQSTYLGSYINRTLLDSQYSYQK 122

Query: 379 SIEES 393
           SIE++
Sbjct: 123 SIEDA 127



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/108 (40%), Positives = 72/108 (66%)
 Frame = +1

Query: 409 DTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVIRNSPLTN 588
           D  ++++G LTLKA+RL+ + + +YK+G+++ + L    I + ++F E+P+VI+NS L N
Sbjct: 195 DPLRTSQGMLTLKAFRLSDEMMKLYKDGEFSADKLSKAGISFHSMFQEIPLVIKNSSLMN 254

Query: 589 IMISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKF 732
           +++ EL E  P     +FL L T S LE  +R LME VDEL Q++ K+
Sbjct: 255 VLLCELDENTPTPSADQFLTLSTGSYLEKNVRVLMESVDELCQDSNKY 302


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 24/88 (27%), Positives = 41/88 (46%)
 Frame = +1

Query: 466  QAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVIRNSPLTNIMISELTEMIPEEEGSKFL 645
            Q + M K+   + E L ++    +NL  +V  +          I+ +T+   E E   F 
Sbjct: 1622 QEMLMAKDATDSAENLESVSKERDNLLRDVNRLREEVSTNKTTITNVTKRRDELEKENFS 1681

Query: 646  DLGTASVLEGQLRSLMERVDELNQEAIK 729
              G AS  E +++ L +  D+LN+E IK
Sbjct: 1682 LRGQASDAEMKIKGLEQDNDDLNRELIK 1709


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 46  PENEATIQYVQCDGLAVMKIVKHCHEES-CSNMEVAQGALLGLVVENRLEITNCFPFPKH 222
           P  +  I  V    + ++ +V H +      + +   G LLG   +  L++ NCF  P  
Sbjct: 2   PGPDEAITTVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFD 61

Query: 223 DDTMDEEEYQLD 258
           +D  D+  + LD
Sbjct: 62  EDDRDQNVWFLD 73


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 214 PKHDDTMDEEEYQLDMMRRLRRVNVDHFHVGWYQSADV 327
           PK DD    EEY+  M  R +R +V+H H  W   +D+
Sbjct: 153 PKWDD-FSVEEYKARMNYRQQRRSVEHRHEPWLWESDI 189


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 279  SSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHL 142
            S + PH V    L +    +  +W  V NL + ++   KES L HL
Sbjct: 1931 SHETPHVVMEFLLSLQQYELAAEWAEVENLPSEIHQTIKESQLKHL 1976


>SB_40279| Best HMM Match : zf-MYM (HMM E-Value=0.66)
          Length = 364

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = +1

Query: 46  PENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHD 225
           PE  AT+Q V+    + +        ES S  E A   ++  V E  +E     P     
Sbjct: 17  PEEGATVQAVETTHESAVVPALETAGESAS--EPAAELVVEFVPEQGVE-----PTQTPT 69

Query: 226 DTMDEEEYQLDMMRRLRRVNVDHFHV--GWYQSAD 324
           +  ++ E  LD++ R R V VD+ +V  G Y++AD
Sbjct: 70  NAPEQVEEPLDLVNRARAVGVDYEYVTQGIYETAD 104


>SB_31995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 442 LKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFIE 552
           LKAYR  PQA A+    D+  +    L +  +N F E
Sbjct: 16  LKAYRKAPQAAAIQLMSDHGSQLRSKLLVTIDNFFFE 52


>SB_24366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = +1

Query: 535 ENLFIEVPIVIRNSPLTNIMISELTEM--------IPEEEGSKFLDLGTASVLEGQLRSL 690
           +N+F+ +P+V+  +  T ++  ++ E+        +P E+  K LD      +  Q R  
Sbjct: 53  QNVFLSLPLVLSENETTLLLEKKVVELKQSDSAPPLPSEDKVKRLDFLREESMHEQARMF 112

Query: 691 MERVDELNQE 720
           +E  +E  QE
Sbjct: 113 LEEREEKKQE 122


>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 693 HETAKLSFENRCSTQIQKLGSFLFRYHLGELRDH 592
           H + ++S   R ST  Q L   LFR H+G LRDH
Sbjct: 800 HHSTRVS-AYRPSTNTQVLIPALFRGHMGLLRDH 832


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,495,126
Number of Sequences: 59808
Number of extensions: 512803
Number of successful extensions: 1387
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)