Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f24
         (474 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQ41 Cluster: Signal recognition particle 19 kDa prot...    47   2e-04
UniRef50_P09132 Cluster: Signal recognition particle 19 kDa prot...    41   0.012
UniRef50_P49963 Cluster: Signal recognition particle 19 kDa prot...    40   0.037
UniRef50_Q5DD78 Cluster: SJCHGC02662 protein; n=1; Schistosoma j...    39   0.049
UniRef50_Q943Z6 Cluster: Signal recognition particle 19 kDa prot...    38   0.15 
UniRef50_A2YCL3 Cluster: Putative uncharacterized protein; n=1; ...    36   0.46 
UniRef50_A7RJY5 Cluster: Predicted protein; n=1; Nematostella ve...    36   0.46 
UniRef50_UPI0000499D1D Cluster: Signal recognition particle 19 k...    34   1.8  
UniRef50_O61749 Cluster: Probable signal recognition particle 19...    33   3.2  

>UniRef50_Q1HQ41 Cluster: Signal recognition particle 19 kDa
           protein; n=1; Bombyx mori|Rep: Signal recognition
           particle 19 kDa protein - Bombyx mori (Silk moth)
          Length = 148

 Score = 46.8 bits (106), Expect = 2e-04
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 418 RWICIYPAYLNSKKTLAEG 474
           RWICIYPAYLNSKKTLAEG
Sbjct: 19  RWICIYPAYLNSKKTLAEG 37



 Score = 45.6 bits (103), Expect = 6e-04
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = +1

Query: 223 MASMITSWNPEKKHSDVERF 282
           MASMITSWNPEKKHSDVER+
Sbjct: 1   MASMITSWNPEKKHSDVERW 20


>UniRef50_P09132 Cluster: Signal recognition particle 19 kDa
           protein; n=31; Coelomata|Rep: Signal recognition
           particle 19 kDa protein - Homo sapiens (Human)
          Length = 144

 Score = 41.1 bits (92), Expect = 0.012
 Identities = 16/20 (80%), Positives = 20/20 (100%)
 Frame = +1

Query: 415 NRWICIYPAYLNSKKTLAEG 474
           +R+ICIYPAYLN+KKT+AEG
Sbjct: 13  DRFICIYPAYLNNKKTIAEG 32


>UniRef50_P49963 Cluster: Signal recognition particle 19 kDa
           protein; n=8; Endopterygota|Rep: Signal recognition
           particle 19 kDa protein - Drosophila melanogaster (Fruit
           fly)
          Length = 160

 Score = 39.5 bits (88), Expect = 0.037
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 418 RWICIYPAYLNSKKTLAEG 474
           RWICIYPAY+N KKT  EG
Sbjct: 22  RWICIYPAYINRKKTRQEG 40


>UniRef50_Q5DD78 Cluster: SJCHGC02662 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC02662 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 148

 Score = 39.1 bits (87), Expect = 0.049
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = +1

Query: 418 RWICIYPAYLNSKKTLAEG 474
           RWIC+YPAYLN+++T A+G
Sbjct: 20  RWICVYPAYLNNRRTRAQG 38


>UniRef50_Q943Z6 Cluster: Signal recognition particle 19 kDa
           protein; n=4; Magnoliophyta|Rep: Signal recognition
           particle 19 kDa protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 145

 Score = 37.5 bits (83), Expect = 0.15
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +1

Query: 418 RWICIYPAYLNSKKTLAEG 474
           +W+ IYP Y+NSKKT+AEG
Sbjct: 10  KWVVIYPVYINSKKTVAEG 28


>UniRef50_A2YCL3 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (indica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. indica
           (Rice)
          Length = 105

 Score = 35.9 bits (79), Expect = 0.46
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +1

Query: 418 RWICIYPAYLNSKKTLAEG 474
           +W  IYP YLNSKKT+AEG
Sbjct: 12  KWNVIYPVYLNSKKTVAEG 30


>UniRef50_A7RJY5 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 148

 Score = 35.9 bits (79), Expect = 0.46
 Identities = 11/20 (55%), Positives = 18/20 (90%)
 Frame = +1

Query: 415 NRWICIYPAYLNSKKTLAEG 474
           +RW+ +YPAYLNS++T+ +G
Sbjct: 13  DRWVTVYPAYLNSRRTVCQG 32


>UniRef50_UPI0000499D1D Cluster: Signal recognition particle 19 kDa
           protein; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
           Signal recognition particle 19 kDa protein - Entamoeba
           histolytica HM-1:IMSS
          Length = 122

 Score = 33.9 bits (74), Expect = 1.8
 Identities = 12/20 (60%), Positives = 18/20 (90%)
 Frame = +1

Query: 415 NRWICIYPAYLNSKKTLAEG 474
           +RWI IYPAY++S+ T+A+G
Sbjct: 10  SRWIVIYPAYIDSELTIAQG 29


>UniRef50_O61749 Cluster: Probable signal recognition particle 19
           kDa protein; n=2; Caenorhabditis|Rep: Probable signal
           recognition particle 19 kDa protein - Caenorhabditis
           elegans
          Length = 160

 Score = 33.1 bits (72), Expect = 3.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 418 RWICIYPAYLNSKKTLAEG 474
           RWI IYPAY++ KKT  +G
Sbjct: 14  RWIVIYPAYIDKKKTAKQG 32


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,130,549
Number of Sequences: 1657284
Number of extensions: 6974418
Number of successful extensions: 12101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12101
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)