Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f24
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0255 - 13522303-13522337,13524027-13524126,13524247-135244...    36   0.017
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102...    27   7.7  
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301...    27   7.7  
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280...    27   7.7  

>06_02_0255 -
           13522303-13522337,13524027-13524126,13524247-13524468,
           13524608-13524695,13525507-13525562
          Length = 166

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +1

Query: 418 RWICIYPAYLNSKKTLAEG 474
           +W  IYP YLNSKKT+AEG
Sbjct: 73  KWNVIYPVYLNSKKTVAEG 91


>06_03_1445 -
           30209354-30209396,30209798-30209875,30210220-30210285,
           30212275-30212322,30212408-30212571,30212726-30213581,
           30213673-30213786,30213853-30213996,30214075-30214304,
           30214584-30214724,30214810-30214887,30214972-30215053,
           30215130-30215184,30215284-30215407,30215548-30215641,
           30215718-30215794,30215873-30215982,30216058-30216655
          Length = 1033

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 336 DRW*PMVMLLKKSQYIISKPFHITVLLFGIP 244
           DRW P+   LK   Y ++KP HI    F +P
Sbjct: 615 DRWIPLRTFLKLRGYHLTKPRHIRCDGFFLP 645


>06_03_1433 -
           30129184-30129226,30129628-30129705,30130050-30130115,
           30132105-30132152,30132238-30132401,30132556-30133411,
           30133503-30133616,30133683-30133826,30133905-30134134,
           30134414-30134554,30134640-30134717,30134802-30134883,
           30134958-30135012,30135112-30135235,30135376-30135469,
           30135546-30135622,30135701-30135810,30135886-30136483
          Length = 1033

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 336 DRW*PMVMLLKKSQYIISKPFHITVLLFGIP 244
           DRW P+   LK   Y ++KP HI    F +P
Sbjct: 615 DRWIPLRTFLKLRGYHLTKPRHIRCDGFFLP 645


>06_03_1416 +
           30027066-30027663,30027739-30027848,30027927-30028003,
           30028080-30028173,30028314-30028437,30028537-30028591,
           30028666-30028747,30028832-30028909,30028995-30029135,
           30029416-30029645,30029724-30029867,30029934-30030047,
           30030139-30030994,30031149-30031312,30031398-30031445,
           30033435-30033500,30033845-30033922,30034324-30034366
          Length = 1033

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 336 DRW*PMVMLLKKSQYIISKPFHITVLLFGIP 244
           DRW P+   LK   Y ++KP HI    F +P
Sbjct: 615 DRWIPLRTFLKLRGYHLTKPRHIRCDGFFLP 645


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,609,955
Number of Sequences: 37544
Number of extensions: 172763
Number of successful extensions: 262
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)