Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10f24
(474 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067212-1|AAC16997.3| 160|Caenorhabditis elegans Hypothetical ... 33 0.10
AF016423-7|AAB65321.1| 211|Caenorhabditis elegans Hypothetical ... 29 2.3
AF068713-2|AAC17805.1| 347|Caenorhabditis elegans Seven tm rece... 28 3.9
Z19154-6|CAC35885.2| 388|Caenorhabditis elegans Hypothetical pr... 27 5.2
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 27 6.9
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 27 6.9
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 27 6.9
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 27 6.9
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 27 6.9
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 27 6.9
U39644-1|AAA80359.2| 393|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AF067212-1|AAC16997.3| 160|Caenorhabditis elegans Hypothetical
protein F37F2.2 protein.
Length = 160
Score = 33.1 bits (72), Expect = 0.10
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 418 RWICIYPAYLNSKKTLAEG 474
RWI IYPAY++ KKT +G
Sbjct: 14 RWIVIYPAYIDKKKTAKQG 32
>AF016423-7|AAB65321.1| 211|Caenorhabditis elegans Hypothetical
protein F40A3.1 protein.
Length = 211
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 263 TVMWKGLEIIYCDFFSNITIGYHLS 337
T WKG E++ C + + I +HLS
Sbjct: 65 TYSWKGNEVLRCKHWDKVAIRWHLS 89
>AF068713-2|AAC17805.1| 347|Caenorhabditis elegans Seven tm
receptor protein 260 protein.
Length = 347
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 287 FPNLST--SLCFFSGFQDVIILAMSSHFVWNFLN 192
FP L S+ F+ GF + + ++ HF++ FL+
Sbjct: 80 FPKLMACCSVLFYGGFYGITLAILALHFIYRFLS 113
>Z19154-6|CAC35885.2| 388|Caenorhabditis elegans Hypothetical
protein C40H1.7 protein.
Length = 388
Score = 27.5 bits (58), Expect = 5.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 288 ISKPFHITVLLFGIPRC 238
+S P+++ V+LFG PRC
Sbjct: 224 MSSPYNMKVILFGCPRC 240
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 213 LCLEFSKSKLSVIRTYSAYVLLMSFC*AISLN*HLKITFEFYTI 82
L E KS+ S +R++SA L + FC + ++ + ++FY +
Sbjct: 54 LFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIYDFYLL 97
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 213 LCLEFSKSKLSVIRTYSAYVLLMSFC*AISLN*HLKITFEFYTI 82
L E KS+ S +R++SA L + FC + ++ + ++FY +
Sbjct: 54 LFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIYDFYLL 97
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 213 LCLEFSKSKLSVIRTYSAYVLLMSFC*AISLN*HLKITFEFYTI 82
L E KS+ S +R++SA L + FC + ++ + ++FY +
Sbjct: 54 LFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIYDFYLL 97
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 213 LCLEFSKSKLSVIRTYSAYVLLMSFC*AISLN*HLKITFEFYTI 82
L E KS+ S +R++SA L + FC + ++ + ++FY +
Sbjct: 54 LFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIYDFYLL 97
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 213 LCLEFSKSKLSVIRTYSAYVLLMSFC*AISLN*HLKITFEFYTI 82
L E KS+ S +R++SA L + FC + ++ + ++FY +
Sbjct: 54 LFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIYDFYLL 97
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 213 LCLEFSKSKLSVIRTYSAYVLLMSFC*AISLN*HLKITFEFYTI 82
L E KS+ S +R++SA L + FC + ++ + ++FY +
Sbjct: 54 LFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIYDFYLL 97
>U39644-1|AAA80359.2| 393|Caenorhabditis elegans Hypothetical
protein T10E10.3 protein.
Length = 393
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 273 HITVLLFGIPRCYHTSHV*SLCL 205
H+T + I CY SH+ S CL
Sbjct: 265 HVTYTVIAIVTCYIVSHIPSACL 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,932,609
Number of Sequences: 27780
Number of extensions: 180274
Number of successful extensions: 356
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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