Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f24
         (474 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48160.1 68414.m05375 signal recognition particle 19 kDa prot...    38   0.005
At1g65640.1 68414.m07446 DegP protease, putative contains simila...    29   1.2  
At3g06370.1 68416.m00735 sodium proton exchanger, putative (NHX3...    27   6.5  

>At1g48160.1 68414.m05375 signal recognition particle 19 kDa
           protein, putative / SRP19, putative similar to signal
           recognition particle 19 kDa protein subunit SRP19
           GI:624221 [Oryza sativa (japonica cultivar-group)];
           contains Pfam profile: PF01922 SRP19 protein
          Length = 145

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +1

Query: 418 RWICIYPAYLNSKKTLAEG 474
           +W+ IYP Y+NSKKT+AEG
Sbjct: 10  KWVVIYPVYINSKKTVAEG 28


>At1g65640.1 68414.m07446 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 518

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 160 VCAFNELLLSNQLKLTFKNHV*ILYNYFVGL 68
           + A +++L+ N  K+TF+N   I +N+FV +
Sbjct: 323 ILAIDDVLIGNDAKVTFRNKERINFNHFVSM 353


>At3g06370.1 68416.m00735 sodium proton exchanger, putative (NHX3)
           similar to sodium proton exchanger (Nhx1) GB:AAD16946
           [Arabidopsis thaliana]; Member of The Monovalent
           Cation:Proton Antiporter (CPA1) Family, PMID:11500563
          Length = 503

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = -1

Query: 342 NTDRW*PMVMLLKKSQYIISKPFH----ITVLLFGIPRCYHTSHV*SLCLEFSKSKLSVI 175
           +TDR   ++MLL    Y++++ FH    +TV   GI   ++T H  +      KSK++  
Sbjct: 249 STDREVALMMLLAYLSYMLAELFHLSSILTVFFCGIVMSHYTWHNVT-----DKSKVTTK 303

Query: 174 RTYSAYVLL 148
            T++A   L
Sbjct: 304 HTFAAMSFL 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,103,627
Number of Sequences: 28952
Number of extensions: 158506
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)