Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10f23
(420 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 69 4e-13
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 67 1e-12
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 29 0.39
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 29 0.39
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 0.90
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 1.2
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 26 2.1
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 26 2.1
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 4.8
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 6.3
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 8.4
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 8.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 24 8.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 24 8.4
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 68.5 bits (160), Expect = 4e-13
Identities = 31/64 (48%), Positives = 48/64 (75%)
Frame = +1
Query: 163 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVI 342
+FDK +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V QH Q I
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80
Query: 343 YTRA 354
YTRA
Sbjct: 81 YTRA 84
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 66.9 bits (156), Expect = 1e-12
Identities = 30/63 (47%), Positives = 47/63 (74%)
Frame = +1
Query: 163 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVI 342
+FDK +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V QH Q I
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80
Query: 343 YTR 351
YTR
Sbjct: 81 YTR 83
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 28.7 bits (61), Expect = 0.39
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -2
Query: 287 SMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL 108
S+SA FNL+ GV ++ G S +F+ + + + W F + P+D FL
Sbjct: 139 SLSADTIGRRWAFNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFL 197
Query: 107 -ALP 99
ALP
Sbjct: 198 EALP 201
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 28.7 bits (61), Expect = 0.39
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 184 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 71
+M YQ TP HE WT SS L H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 0.90
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 191 SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 93
SF Y L NN++L +S + ++ F++ PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 65 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 163
K HR DP+ P RR GP + V + +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 2.1
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = -2
Query: 299 FSLSSMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLFNLSRT 135
F S M+ + + FN LSD VIS G + Y F V LS+ T W N +
Sbjct: 203 FYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFP 262
Query: 134 FPLDHF 117
+P+ F
Sbjct: 263 YPIITF 268
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 2.1
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = -2
Query: 386 IVYATGSSPLVARV*ITCPWCWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYC 207
I+Y T ++P++ + +T CW L P L ++ L P + SD ++
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP--LCTIVTL----PVENHSSDAILTLLYNSV 313
Query: 206 GTSLYSFSYVGLSNNTWLFNLSRTF 132
S +SF + ++ LF SR F
Sbjct: 314 KESYHSFKHAMSISSIRLFLFSRLF 338
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 4.8
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 224 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 93
V+ + C +L F ++ G+ N T P +F+ L PPP
Sbjct: 37 VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.6 bits (51), Expect = 6.3
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 238 SERLKVRGSLARRALIELREKGLIKQVVQHHGQVIY 345
+ERL + ++ R AL+EL++ LIKQ QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 170 SNNTWLFNLSRTFPLDHFFFLAL 102
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 112 SWLCRHRILPSSSVFFEAVW 53
+WL + ++PSSS F + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.2 bits (50), Expect = 8.4
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 290 SSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT--WLFNLSRTFP 129
S+ S L+ EP+TF+ S T + IS SL LS++T L + S T P
Sbjct: 946 SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIP 1001
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 24.2 bits (50), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 244 RLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 369
R RG++ R +I +EK +++VV G+ TR TK D
Sbjct: 1551 RFITRGTIEERIVIRAKEKEEVQKVVISGGE---TRPTKQMD 1589
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,792
Number of Sequences: 5004
Number of extensions: 36177
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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