Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f22
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   4e-20
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               77   9e-15
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   5e-14
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   3e-10
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         38   0.005
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.015
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.060
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.080
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         33   0.14 
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          33   0.18 
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         33   0.24 
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.42 
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         29   2.3  
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)               27   9.1  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 55/129 (42%), Positives = 68/129 (52%)
 Frame = +2

Query: 215 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPE 394
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 395 GEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRXIYGERFEDENFS*STMVLVGYLWLMQA 574
           G GYK S FHRVIKNFMIQ              IYG+ F+DENF+   +   G  WL  A
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFN---LKHYGPGWLCMA 123

Query: 575 KTQMDLNFS 601
               + N S
Sbjct: 124 NAGKNTNGS 132



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +1

Query: 529 LKHYGAGWLSMANAGKDTNGSQFFXXTV 612
           LKHYG GWL MANAGK+TNGSQF+  T+
Sbjct: 112 LKHYGPGWLCMANAGKNTNGSQFYITTI 139


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 39/88 (44%), Positives = 49/88 (55%)
 Frame = +2

Query: 263 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 442
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 443 MIQXXXXXXXXXXXXRXIYGERFEDENF 526
           M Q            + IYG +FEDENF
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENF 221



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 529 LKHYGAGWLSMANAGKDTNGSQFFXXT 609
           LKH GAG LSMAN+G +TNGSQFF  T
Sbjct: 223 LKHTGAGVLSMANSGPNTNGSQFFLTT 249


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 41/90 (45%), Positives = 49/90 (54%)
 Frame = +2

Query: 260 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 439
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 440 FMIQXXXXXXXXXXXXRXIYGERFEDENFS 529
           FM Q            + IYG +F DENF+
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFN 88



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = +1

Query: 529 LKHYGAGWLSMANAGKDTNGSQFFXXT 609
           LKH G G LSMANAG  TNGSQFF  T
Sbjct: 89  LKHTGPGILSMANAGPGTNGSQFFLCT 115


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 51/147 (34%), Positives = 68/147 (46%), Gaps = 18/147 (12%)
 Frame = +2

Query: 215 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPK 355
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF              +++  
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67

Query: 356 TTENFFQL-----AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRXIYGERFEDE 520
           T   +F        +  +G GYK S FHRVI++FMIQ            + IYG++F DE
Sbjct: 68  TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE 127

Query: 521 NFS*STMVLVGYLWLMQAKTQMDLNFS 601
           NF    +   G  WL  A    D N S
Sbjct: 128 NFK---LQHYGAGWLSMANAGKDTNGS 151



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = +1

Query: 526 QLKHYGAGWLSMANAGKDTNGSQFFXXTV 612
           +L+HYGAGWLSMANAGKDTNGSQFF  TV
Sbjct: 130 KLQHYGAGWLSMANAGKDTNGSQFFITTV 158


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +1

Query: 523 LQLKHYGAGWLSMANAGKDTNGSQFFXXTV 612
           L  +H   G LSMAN+G +TNGSQFF  TV
Sbjct: 185 LSTEHDKPGLLSMANSGPNTNGSQFFITTV 214


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +1

Query: 559 MANAGKDTNGSQFFXXTV 612
           MANAGKDTNGSQFF  TV
Sbjct: 1   MANAGKDTNGSQFFITTV 18


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +2

Query: 308 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 436
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +2

Query: 308 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 451
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQ 75


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 529 LKHYGAGWLSMANAGKDTNGSQFFXXTV 612
           L+H     +SMANAG +TNGSQFF   V
Sbjct: 22  LRHDRPYTVSMANAGPNTNGSQFFITVV 49


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +1

Query: 553 LSMANAGKDTNGSQFFXXT 609
           LSMANAG  TNGSQFF  T
Sbjct: 3   LSMANAGPGTNGSQFFLCT 21


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 526 QLKHYGAGWLSMANAGKDTNGSQFF 600
           + KH     LSMAN G +TNGSQFF
Sbjct: 43  EFKHERPMLLSMANRGPNTNGSQFF 67


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +2

Query: 314 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 427
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 535 HYGAGWLSMANAGKDTNGSQFF 600
           H   G +SMAN G ++NGSQFF
Sbjct: 301 HNARGTVSMANNGPNSNGSQFF 322


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 535 HYGAGWLSMANAGKDTNGSQFF 600
           H   G + MAN G+ TNGSQF+
Sbjct: 66  HNRRGVVGMANKGRHTNGSQFY 87


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 270 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 169
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
          Length = 410

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 270 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 169
           VTL PL +S+    ++N++   A+VRV  I  SL
Sbjct: 336 VTLSPLQVSAKTGSSLNDQAEVAMVRVSPILASL 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,817,485
Number of Sequences: 59808
Number of extensions: 305203
Number of successful extensions: 465
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)