Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10f22
(614 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase, ch... 98 5e-21
At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase, pu... 93 1e-19
At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase / c... 91 4e-19
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc... 89 3e-18
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu... 83 1e-16
At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase, pu... 74 7e-14
At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase / c... 70 1e-12
At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase, cy... 70 1e-12
At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase / c... 69 2e-12
At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase / c... 68 4e-12
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 68 6e-12
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 68 6e-12
At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase, pu... 67 8e-12
At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase, pu... 65 3e-11
At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase / c... 63 1e-10
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 48 4e-06
At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase, pu... 45 5e-05
At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase cyc... 42 2e-04
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 41 7e-04
At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase cyc... 40 0.001
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu... 40 0.001
At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase cyc... 38 0.004
At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase cyc... 38 0.004
At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase cyc... 38 0.004
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc... 38 0.004
At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase cyc... 36 0.016
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc... 36 0.028
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 0.80
At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase cyc... 30 1.1
At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative (CH... 29 2.4
At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5) i... 29 2.4
At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5) i... 29 2.4
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat... 27 7.5
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat... 27 7.5
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat... 27 7.5
At4g23160.1 68417.m03342 protein kinase family protein contains ... 27 9.9
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)... 27 9.9
>At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase,
chloroplast / cyclophilin / rotamase / cyclosporin
A-binding protein (ROC4) identical to peptidyl-prolyl
cis-trans isomerase, chloroplast precursor, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34791; identical to
cDNA nuclear-encoded chloroplast stromal cyclophilin
(ROC4) GI:405130
Length = 260
Score = 97.9 bits (233), Expect = 5e-21
Identities = 49/102 (48%), Positives = 64/102 (62%)
Frame = +2
Query: 224 IASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG 403
+A+ + + I KVT+KV FD++IG + G IV+GLFG+ VPKT ENF L + G
Sbjct: 79 MAAEEEEVIEPQAKVTNKVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYG 138
Query: 404 YKGSKFHRVIKNFMIQXXXXXXXXXXXXRXIYGERFEDENFS 529
YKGS FHR+IK+FMIQ IYG +FEDENF+
Sbjct: 139 YKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFT 180
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +1
Query: 529 LKHYGAGWLSMANAGKDTNGSQFFXXTV 612
LKH G G LSMANAG +TNGSQFF TV
Sbjct: 181 LKHTGPGILSMANAGPNTNGSQFFICTV 208
>At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
(ROC7) similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 204
Score = 93.5 bits (222), Expect = 1e-19
Identities = 56/127 (44%), Positives = 73/127 (57%), Gaps = 7/127 (5%)
Frame = +2
Query: 167 TKLVLIMGTLTMALGILLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKT 346
+ + L++ +L + LG L I + KS E K ++THKV FD++I G IV+GLFGKT
Sbjct: 3 SSVTLLLWSLLL-LGTLSAIQAKKSKENLK--EITHKVYFDVEIDGKAAGRIVMGLFGKT 59
Query: 347 VPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXXXXXXXXRXIYGE 505
VPKT ENF L +G G YKGS FHR+I +FM+Q IYGE
Sbjct: 60 VPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGE 119
Query: 506 RFEDENF 526
+F DENF
Sbjct: 120 KFADENF 126
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +1
Query: 526 QLKHYGAGWLSMANAGKDTNGSQFFXXTV 612
+LKH G G+LSMANAG+DTNGSQFF TV
Sbjct: 127 KLKHTGPGFLSMANAGQDTNGSQFFITTV 155
>At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP5) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443755|gb|AAB71401
Length = 201
Score = 91.5 bits (217), Expect = 4e-19
Identities = 52/108 (48%), Positives = 64/108 (59%), Gaps = 7/108 (6%)
Frame = +2
Query: 224 IASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG 403
IAS ++ E K +VTHKV FD++I + G +VIGLFGK VPKT ENF L +G G
Sbjct: 18 IASIQAKEDLK--EVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVG 75
Query: 404 -------YKGSKFHRVIKNFMIQXXXXXXXXXXXXRXIYGERFEDENF 526
YKGSKFHR+I +FMIQ IYG++F DENF
Sbjct: 76 KSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENF 123
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +1
Query: 526 QLKHYGAGWLSMANAGKDTNGSQFFXXTV 612
+LKH G G LSMAN+G+DTNGSQFF TV
Sbjct: 124 KLKHTGPGVLSMANSGEDTNGSQFFITTV 152
>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 259
Score = 88.6 bits (210), Expect = 3e-18
Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Frame = +2
Query: 263 KVTHKVSFDMKIGDDN---IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 433
K+THKV FD+ +G+ G IVIGL+G VP+T ENF L +G GYKGS FHRVI
Sbjct: 87 KITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVI 146
Query: 434 KNFMIQXXXXXXXXXXXXRXIYGERFEDENF 526
++FMIQ + +YG F+DENF
Sbjct: 147 RDFMIQGGDFEKGNGTGGKSVYGRTFKDENF 177
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +1
Query: 505 TF*R*KLQLKHYGAGWLSMANAGKDTNGSQFFXXTV 612
TF +L H G G LSMANAG +TNGSQFF T+
Sbjct: 171 TFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTI 206
>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 228
Score = 83.0 bits (196), Expect = 1e-16
Identities = 47/109 (43%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = +2
Query: 224 IASAKSDEIPKGPK-VTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGE 400
I AK +++ + + VTHKV FD++I G I+IGLFG VPKT ENF L +G
Sbjct: 42 ILDAKLNQVGEDLEGVTHKVYFDIQINGSPAGRILIGLFGNIVPKTAENFRSLCTGEKGV 101
Query: 401 G-------YKGSKFHRVIKNFMIQXXXXXXXXXXXXRXIYGERFEDENF 526
G +KGS FHR+I FMIQ IYG++F DENF
Sbjct: 102 GNMGKPLYFKGSSFHRIIPGFMIQGGDFTRGDGRGGESIYGDKFADENF 150
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +1
Query: 526 QLKHYGAGWLSMANAGKDTNGSQFFXXTV 612
+LKH G G+LSMAN+G D+NGSQFF TV
Sbjct: 151 KLKHTGPGFLSMANSGPDSNGSQFFITTV 179
>At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 224
Score = 74.1 bits (174), Expect = 7e-14
Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Frame = +2
Query: 170 KLVLIMGTLTMALGILLFIASAKSD-EIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKT 346
+ +L++ LT+ L LF + ++ + ++T++V D+ I +G IVIGL+G
Sbjct: 12 RCLLLLVALTIFLVFALFNTGKDEEKQVIEDHEITNRVFLDVDIDGQRLGRIVIGLYGTV 71
Query: 347 VPKTTENFFQLAQKPEGE-------GYKGSKFHRVIKNFMIQXXXXXXXXXXXXRXIYGE 505
VPKT ENF L +G+ YKG+ FHR+I F+IQ IYG
Sbjct: 72 VPKTVENFRALCTGEKGKTSSGKPLHYKGTPFHRIISGFVIQGGDIIHGDGKSSDSIYGG 131
Query: 506 RFEDENF 526
F DENF
Sbjct: 132 TFPDENF 138
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +1
Query: 505 TF*R*KLQLKHYGAGWLSMANAGKDTNGSQFFXXTV 612
TF +++H AG ++MAN G D+NGSQFF TV
Sbjct: 132 TFPDENFKIQHSHAGMVAMANTGPDSNGSQFFITTV 167
>At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP2) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443757|gb|AAB71402; similar
to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34790
Length = 174
Score = 70.1 bits (164), Expect = 1e-12
Identities = 41/91 (45%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 433
KV FDM IG G IV+ L+ PKT ENF L +G G +KGS FHRVI
Sbjct: 6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVI 65
Query: 434 KNFMIQXXXXXXXXXXXXRXIYGERFEDENF 526
NFM Q IYG +FEDENF
Sbjct: 66 PNFMCQGGDFTKGNGTGGESIYGAKFEDENF 96
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = +1
Query: 532 KHYGAGWLSMANAGKDTNGSQFFXXTV 612
KH G G LSMANAG +TNGSQFF TV
Sbjct: 99 KHTGPGILSMANAGANTNGSQFFICTV 125
>At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase,
cytosolic / cyclophilin / rotamase (ROC3) identical to
cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
Length = 173
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/91 (42%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 433
KV FDM +G + G IV+ L+ T P+T ENF L G G YKGS FHRVI
Sbjct: 6 KVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVI 65
Query: 434 KNFMIQXXXXXXXXXXXXRXIYGERFEDENF 526
FM Q IYG +F+DENF
Sbjct: 66 PKFMCQGGDFTAGNGTGGESIYGSKFKDENF 96
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +1
Query: 532 KHYGAGWLSMANAGKDTNGSQFFXXT 609
KH G G LSMANAG +TNGSQFF T
Sbjct: 99 KHTGPGILSMANAGANTNGSQFFICT 124
>At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase /
cyclophilin / rotamase / cyclosporin A-binding protein
(ROC1) identical to SP|P34790 Peptidyl-prolyl cis-trans
isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin)
(Cyclosporin A-binding protein) {Arabidopsis thaliana}
Length = 172
Score = 69.3 bits (162), Expect = 2e-12
Identities = 40/91 (43%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 433
KV FDM I G IV+ L+ P+T ENF L +G G +KGSKFHRVI
Sbjct: 5 KVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVI 64
Query: 434 KNFMIQXXXXXXXXXXXXRXIYGERFEDENF 526
NFM Q IYG +FEDENF
Sbjct: 65 PNFMCQGGDFTAGNGTGGESIYGSKFEDENF 95
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = +1
Query: 532 KHYGAGWLSMANAGKDTNGSQFFXXTV 612
KH G G LSMANAG +TNGSQFF TV
Sbjct: 98 KHTGPGILSMANAGANTNGSQFFICTV 124
>At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase /
cyclophilin-40 (CYP40) / rotamase identical to
cyclophilin-40 [Arabidopsis thaliana] GI:13442983;
supporting cDNA gi|13442982|gb|AY026065.1|
Length = 361
Score = 68.1 bits (159), Expect = 4e-12
Identities = 40/92 (43%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHRV 430
K D+ IG + G IVI L+ VPKT ENF L +G G YKG++FHRV
Sbjct: 5 KCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRV 64
Query: 431 IKNFMIQXXXXXXXXXXXXRXIYGERFEDENF 526
IK FMIQ IYG +F+DENF
Sbjct: 65 IKGFMIQGGDISANDGTGGESIYGLKFDDENF 96
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +1
Query: 526 QLKHYGAGWLSMANAGKDTNGSQFFXXT 609
+LKH G LSMAN+G +TNGSQFF T
Sbjct: 97 ELKHERKGMLSMANSGPNTNGSQFFITT 124
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 67.7 bits (158), Expect = 6e-12
Identities = 41/96 (42%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = +2
Query: 263 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 418
K V D+ IG D + IVI LF VPKT ENF L G G +KGS
Sbjct: 4 KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSS 63
Query: 419 FHRVIKNFMIQXXXXXXXXXXXXRXIYGERFEDENF 526
FHRVIK FM Q IYG +F DENF
Sbjct: 64 FHRVIKGFMAQGGDFSNGNGTGGESIYGGKFSDENF 99
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +1
Query: 526 QLKHYGAGWLSMANAGKDTNGSQFF 600
+L H GAG LSMAN G +TNGSQFF
Sbjct: 100 RLDHDGAGVLSMANCGPNTNGSQFF 124
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 67.7 bits (158), Expect = 6e-12
Identities = 41/96 (42%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = +2
Query: 263 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 418
K V D+ IG D + IVI LF VPKT ENF L G G +KGS
Sbjct: 4 KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSS 63
Query: 419 FHRVIKNFMIQXXXXXXXXXXXXRXIYGERFEDENF 526
FHRVIK FM Q IYG +F DENF
Sbjct: 64 FHRVIKGFMAQGGDFSNGNGTGGESIYGGKFSDENF 99
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +1
Query: 526 QLKHYGAGWLSMANAGKDTNGSQFF 600
+L H GAG LSMAN G +TNGSQFF
Sbjct: 100 RLDHDGAGVLSMANCGPNTNGSQFF 124
>At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Homo sapiens]
gi|3647230|gb|AAC60793
Length = 199
Score = 67.3 bits (157), Expect = 8e-12
Identities = 41/98 (41%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = +2
Query: 251 PKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQ---KPEGE--GYKGS 415
P PK V FD+ IG G I + LF PKT ENF Q + G+ GYK
Sbjct: 26 PPNPK-NPVVFFDVSIGGIPAGRIKMELFADIAPKTAENFRQFCTGELRKAGKPLGYKEC 84
Query: 416 KFHRVIKNFMIQXXXXXXXXXXXXRXIYGERFEDENFS 529
+FHRVIK+FM+Q IYG +FEDENF+
Sbjct: 85 QFHRVIKDFMVQSGDFLKNDGSGCMSIYGHKFEDENFT 122
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +1
Query: 532 KHYGAGWLSMANAGKDTNGSQFF 600
KH G G LSMAN+G +TNG QFF
Sbjct: 124 KHTGPGLLSMANSGPNTNGCQFF 146
>At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Catharanthus roseus] SWISS-PROT:Q39613
Length = 176
Score = 65.3 bits (152), Expect = 3e-11
Identities = 37/91 (40%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 433
KV FD+ IG G +V+ LF P+T NF L G G YKGS FHR+I
Sbjct: 5 KVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRII 64
Query: 434 KNFMIQXXXXXXXXXXXXRXIYGERFEDENF 526
FM Q IYG +FEDENF
Sbjct: 65 PGFMCQGGDFTRGNGTGGESIYGSKFEDENF 95
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +1
Query: 526 QLKHYGAGWLSMANAGKDTNGSQFFXXT 609
+LKH G G LSMAN+G +TNGSQFF T
Sbjct: 96 KLKHTGPGILSMANSGPNTNGSQFFICT 123
>At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP1) / rotamase identical to cyclophilin
(CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl
cis-trans isomerase, PPIase (cyclophilin, cyclosporin
A-binding protein) [Catharanthus roseus]
SWISS-PROT:Q39613
Length = 172
Score = 63.3 bits (147), Expect = 1e-10
Identities = 37/91 (40%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 433
+V FDM + IG I + LF T P T ENF L +G G +KGS FHRVI
Sbjct: 5 RVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVI 64
Query: 434 KNFMIQXXXXXXXXXXXXRXIYGERFEDENF 526
FM Q IYG +F+DENF
Sbjct: 65 PGFMCQGGDFTAKNGTGGESIYGAKFKDENF 95
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +1
Query: 532 KHYGAGWLSMANAGKDTNGSQFFXXT 609
KH GAG LSMAN+G +TNGSQFF T
Sbjct: 98 KHTGAGILSMANSGPNTNGSQFFICT 123
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 48.4 bits (110), Expect = 4e-06
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Frame = +2
Query: 263 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 418
K +V D+ I D T+V LF + PKT+ENF L +G G YKGS
Sbjct: 4 KKNPQVFMDVSIDGDPAETMVFELFPEVAPKTSENFRALCTGEKGIGPRSGKPLHYKGSF 63
Query: 419 FHRVIKNFMIQXXXXXXXXXXXXRXIYGERFEDEN 523
FHR++K Q IY +F DE+
Sbjct: 64 FHRIMKGSSAQAGDFVNRNGTAGESIYAGKFPDES 98
>At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
contains Pfam domain, PF00160: peptidyl-prolyl cis-trans
isomerase, cyclophilin-type
Length = 164
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 526 QLKHYGAGWLSMANAGKDTNGSQFF 600
+LKH GAG LSMANAG +TNGSQFF
Sbjct: 87 ELKHTGAGILSMANAGPNTNGSQFF 111
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +2
Query: 302 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXX 481
+ ++G + ++ K P+T NF +L+++ Y FHR++K+F++Q
Sbjct: 15 ETSMGPFTVEMYYKHSPRTCRNFLELSRRGY---YDNVLFHRIVKDFIVQ-GGDPTGTGR 70
Query: 482 XXRXIYGERFEDE 520
IYG +FEDE
Sbjct: 71 GGESIYGSKFEDE 83
>At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 160
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/71 (38%), Positives = 34/71 (47%)
Frame = +2
Query: 308 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 487
N+G I +F VPK+ ENF L Y G+ FHR IK FMIQ
Sbjct: 8 NLGDIKCEIFCDEVPKSAENFLALCASGY---YDGTIFHRNIKGFMIQ-GGDPKGTGKGG 63
Query: 488 RXIYGERFEDE 520
I+G++F DE
Sbjct: 64 TSIWGKKFNDE 74
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 529 LKHYGAGWLSMANAGKDTNGSQFF 600
LKH G LSMAN+G +TNGSQFF
Sbjct: 79 LKHNARGMLSMANSGPNTNGSQFF 102
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 40.7 bits (91), Expect = 7e-04
Identities = 31/92 (33%), Positives = 40/92 (43%)
Frame = +2
Query: 245 EIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFH 424
++ K PK V F GD NI L P+ ENF L ++ Y G FH
Sbjct: 335 KVEKNPKKKGYVQFQTTHGDLNIE-----LHCDIAPRACENFITLCERGY---YNGVAFH 386
Query: 425 RVIKNFMIQXXXXXXXXXXXXRXIYGERFEDE 520
R I+NFMIQ I+G+ F+DE
Sbjct: 387 RSIRNFMIQ-GGDPTGTGKGGESIWGKPFKDE 417
Score = 36.3 bits (80), Expect = 0.016
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 526 QLKHYGAGWLSMANAGKDTNGSQFF 600
+L H G G +SMAN+G TNGSQFF
Sbjct: 421 KLLHSGRGVVSMANSGPHTNGSQFF 445
>At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 317
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Frame = +2
Query: 164 RTKLVLIMGTLTMALGILLFIASAKSDEIPKGPKVTH--------KVSFDMKIGDDNIGT 319
++ L+L++ T T L LL + A++D I P +T+ K D+ I + IG
Sbjct: 50 KSSLLLLLTTQT-TLTPLLDFSKAQADTIAN-PNLTNCENRIPTKKAFIDVSIDGEPIGR 107
Query: 320 IVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFM 445
I+IGL+G VP T F + G Y+ F +++ ++
Sbjct: 108 IIIGLYGDDVPAGTARFSSIVSGKAGITYRRKDFVKIMPGYV 149
>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase PPIase
(cyclophilin, cyclosporin A-binding protein) [Tomato]
SWISS-PROT:P21568
Length = 232
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 433
KV FD+ + G IVI LF P+T ENF L G G YKGS F ++
Sbjct: 5 KVFFDLTVDGKPAGRIVIELFADLTPRTAENFRGLCTGERGIGKCGKPIHYKGSTFDHIV 64
Query: 434 KNFM 445
+ M
Sbjct: 65 PDLM 68
>At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 314 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 451
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
>At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 314 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 451
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
>At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 314 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 451
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to SP|P87051
Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
(Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
Pfam profiles PF00160: peptidyl-prolyl cis-trans
isomerase cyclophilin-type, PF00400: WD domain G-beta
repeat
Length = 631
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/70 (35%), Positives = 33/70 (47%)
Frame = +2
Query: 311 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXR 490
+G I + L+ + PKT ENF + Y FHRVI+ FMIQ +
Sbjct: 484 LGDIHMKLYPEECPKTVENFTTHCRNGY---YDNHLFHRVIRGFMIQ-TGDPLGDGTGGQ 539
Query: 491 XIYGERFEDE 520
I+G FEDE
Sbjct: 540 SIWGREFEDE 549
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +1
Query: 529 LKHYGAGWLSMANAGKDTNGSQFFXXTV 612
L+H LSMANAG +TNGSQFF TV
Sbjct: 554 LRHDRPFTLSMANAGPNTNGSQFFITTV 581
>At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 230
Score = 36.3 bits (80), Expect = 0.016
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 302 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGY-KGSKFHRVIKNFMIQ 451
D G++ I LF T P + F + Q +GY KG F RV+K+F+IQ
Sbjct: 83 DTGKGSVTIELFKDTAPNVVDQFMKFCQ----DGYFKGFLFSRVVKHFVIQ 129
>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 504
Score = 35.5 bits (78), Expect = 0.028
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 314 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGY-KGSKFHRVIKNFMIQXXXXXXXXXXXXR 490
G I + L+ K PK+ NF QL EGY + FHRVI F++Q
Sbjct: 22 GPIDVELWPKEAPKSVRNFVQLCL----EGYFDNTIFHRVIPGFLVQGGDPTGSGTGGD- 76
Query: 491 XIYGERFEDE 520
IYG F DE
Sbjct: 77 SIYGGVFADE 86
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 308 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 451
++G IVI L P T +NF +L + + Y G FH V K+F Q
Sbjct: 8 SLGDIVIDLHSDKCPLTCKNFLKLCKI---KYYNGCLFHTVQKDFTAQ 52
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 523 LQLKHYGAGWLSMANAGKDTNGSQFF 600
L LKH G ++MA+ G++ N SQF+
Sbjct: 84 LDLKHSKTGTVAMASGGENLNASQFY 109
>At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 290
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 311 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRV 430
+G +V+GL+G+ VP T F ++ YK + H++
Sbjct: 85 LGRVVLGLYGRHVPITVSTFKRMCTS-SSTSYKNTPVHKI 123
>At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative
(CHX25) similar to Na+/H+-exchanging protein slr1595,
Synechocystis sp., PIR:S74951; monovalent cation:proton
antiporter family 2 (CPA2) member, PMID:11500563
Length = 857
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -3
Query: 354 LGTVFPNNP-ITIVPILSSPIFMSKLTL*VTLGPLGISSDLALAMNNKIPKAIVRVPMIK 178
LG V P+ P + + S F+++ + + +G +++ L PK I P+I
Sbjct: 329 LGLVVPHGPPLGSTLAIRSETFVNEFLMPFSFALVGQKTNVNLISKETWPKQIS--PLIY 386
Query: 177 TSLVRFLAIFTKFVSNVYFFKI 112
S+V F+ F FFK+
Sbjct: 387 MSIVGFVTKFVSSTGAALFFKV 408
>At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5)
identical to receptor-like protein kinase 5 [Arabidopsis
thaliana] GI:13506747; contains Pfam domain PF00069:
Protein kinase domain; identical to cDNA receptor-like
protein kinase 5 (RLK5) GI:13506746
Length = 680
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +2
Query: 182 IMGTLTMALGILLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTT 361
++ + L +LLFIA + K K T + ++GDD + L +T+ T
Sbjct: 289 VLVVAVVVLAVLLFIALVGYCFLAKKKKKTFDTASASEVGDDMATADSLQLDYRTIQTAT 348
Query: 362 ENFFQ---LAQKPEGEGYKGS 415
+F + + + GE YKG+
Sbjct: 349 NDFAESNKIGRGGFGEVYKGT 369
>At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5)
identical to receptor-like protein kinase 5 [Arabidopsis
thaliana] GI:13506747; contains Pfam domain PF00069:
Protein kinase domain; identical to cDNA receptor-like
protein kinase 5 (RLK5) GI:13506746
Length = 674
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +2
Query: 182 IMGTLTMALGILLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTT 361
++ + L +LLFIA + K K T + ++GDD + L +T+ T
Sbjct: 289 VLVVAVVVLAVLLFIALVGYCFLAKKKKKTFDTASASEVGDDMATADSLQLDYRTIQTAT 348
Query: 362 ENFFQ---LAQKPEGEGYKGS 415
+F + + + GE YKG+
Sbjct: 349 NDFAESNKIGRGGFGEVYKGT 369
>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 242 DEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF-GKTVPKTTENFFQLAQKPEGEGYKGSK 418
+++P H + D +G N I L K VP++ F L PEG K
Sbjct: 369 EKLPSDISERHVLLLDPILGTGNSAVQAIRLLISKGVPESNIIFLNLISAPEGVNVVCKK 428
Query: 419 FHRV 430
F R+
Sbjct: 429 FPRI 432
>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 242 DEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF-GKTVPKTTENFFQLAQKPEGEGYKGSK 418
+++P H + D +G N I L K VP++ F L PEG K
Sbjct: 369 EKLPSDISERHVLLLDPILGTGNSAVQAIRLLISKGVPESNIIFLNLISAPEGVNVVCKK 428
Query: 419 FHRV 430
F R+
Sbjct: 429 FPRI 432
>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 242 DEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF-GKTVPKTTENFFQLAQKPEGEGYKGSK 418
+++P H + D +G N I L K VP++ F L PEG K
Sbjct: 369 EKLPSDISERHVLLLDPILGTGNSAVQAIRLLISKGVPESNIIFLNLISAPEGVNVVCKK 428
Query: 419 FHRV 430
F R+
Sbjct: 429 FPRI 432
>At4g23160.1 68417.m03342 protein kinase family protein contains Pfam
domain PF00069: Protein kinase domain
Length = 1262
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +2
Query: 200 MALGILLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQ- 376
+ L +LLFIA + + K T + ++GDD + L +T+ T +F +
Sbjct: 883 VVLAVLLFIALVGYCFLAQRTKKTFDTASASEVGDDMATADSLQLDYRTIQTATNDFAES 942
Query: 377 --LAQKPEGEGYKGS 415
+ + GE YKG+
Sbjct: 943 NKIGRGGFGEVYKGT 957
>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
identical to SP|O24617 DNA mismatch repair protein MSH2
(AtMsh2) {Arabidopsis thaliana}
Length = 937
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -3
Query: 216 KIPKAIVRVPMIKTSLVRFLAIFTKFVSNVYFFKI 112
K+ ++ +R+P IKT++ ++ F +S Y K+
Sbjct: 399 KLYQSTIRLPFIKTAMQQYTGEFASLISERYLKKL 433
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,203,019
Number of Sequences: 28952
Number of extensions: 230568
Number of successful extensions: 491
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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