Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f19
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    27   1.5  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    27   2.7  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    26   3.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   4.7  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   4.7  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    25   6.2  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   6.2  
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    25   8.1  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   8.1  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   8.1  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 184 AGLYRELIIWFIRSVRDGSCVCCNSWRVALVT*QQSNSRVLNMIN 50
           +GL R+ ++  +R   D SC+  +SWR++      S S VLN IN
Sbjct: 7   SGLMRQFLLQPLRKGCDISCLGRSSWRMSR---SFSGSSVLNEIN 48


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 184 LRNRSCQLRHQYQQTPRLHLRMNHPHTLTQRAP 282
           +R  S Q +    +TP ++L++  P   TQR P
Sbjct: 106 VRKYSSQKKRMVCETPEMYLKVTKPFIETQRGP 138


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 495 LGGTDKVEDKGKEGKRGDSLSHSRMVLETPILDMHWRLEEIRNQLVAFRDLNT 337
           +GGT K+    +EGK   SL     V     L  +  +   RN+ V   DL T
Sbjct: 231 VGGTSKIAIINREGKLTQSLQSKGDVFSLKYLGDNLVIAGCRNKSVLVYDLRT 283


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 154  FIRSVRDGSCVCCNSW 107
            F+ S  DG CVCC S+
Sbjct: 1554 FLASEMDGECVCCASF 1569


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 154  FIRSVRDGSCVCCNSW 107
            F+ S  DG CVCC S+
Sbjct: 1554 FLASEMDGECVCCASF 1569


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 78  DCCHVTNATLQELQQTQLPSLT 143
           DC H+TN  L+ ++  +LP ++
Sbjct: 203 DCVHLTNNVLRAMKVVELPDIS 224


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 149  DEPNDQFPVQSSFEIAAVNYVISINRLPVY 238
            D PN +   +SS +I  V   ++IN+LP+Y
Sbjct: 959  DTPNYKSIFKSSLDIYHVVIDVNINKLPMY 988


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 78  DCCHVTNATLQELQQTQLPSLTERMNQM 161
           +C H TNA   EL  + +PS   R++++
Sbjct: 104 NCNHFTNAAAIELTGSPIPSFLNRISRI 131


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 127 CVCCNSWRVALVT*QQSNSRVLNMI 53
           C+CCN W     T Q +N+   NMI
Sbjct: 26  CLCCNPWYAGADTRQLANA--FNMI 48


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 227 LPVYIYE*ITHILLPSGLPTASFFHTTSS-SIPTFNSIVFRSRNATS*LRISSSLQC 394
           LP+++Y+  ++   PS LPT       SS  +PT    V  +R ++S    +SS+ C
Sbjct: 166 LPIHLYKSYSYNHSPSSLPTVLNSQALSSPPVPTTPDEVSTNRLSSS----TSSMNC 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,604
Number of Sequences: 5004
Number of extensions: 33407
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)