Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f19
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833...    29   3.6  
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558...    29   3.6  

>06_01_1053 -
           8328902-8329156,8330538-8330804,8330895-8332343,
           8332461-8332619,8333246-8333372,8333444-8333775,
           8333859-8334593,8334735-8335073,8335160-8335313,
           8335405-8336154,8336242-8336372
          Length = 1565

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -1

Query: 405 ILDMHWRLEEIRNQLVAFRDLNTMELKVGILEL 307
           ++ + W+  ++ ++  +  +LNT+EL + ILEL
Sbjct: 900 LIRVEWKKYDVLSRFASTENLNTLELAIDILEL 932


>04_04_1636 + 34951841-34954322,34954440-34954627,34955737-34955838,
            34956101-34956177,34956258-34956319,34956504-34956511
          Length = 972

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
 Frame = +2

Query: 77   RLLSCY*RH-SPRITANTAAIPDRADEPNDQFPVQSSFEIAAVNY--VISI-NRL-PVYI 241
            R   CY  H + +I+   A  PD  DE  D FP   S ++  + Y  + S+  R+  V++
Sbjct: 833  RYRPCYPPHMNTKISHAEAVHPDELDEEFDTFPTSRSPDVIRMRYDRLRSVAGRIQTVWL 892

Query: 242  YE*ITHILLPSGLPTASFFHTTSSSIPTF 328
             +  T +LL + +  A      + SI  F
Sbjct: 893  VQESTSVLLKANMGAAESSSKLAGSIHEF 921


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,386,661
Number of Sequences: 37544
Number of extensions: 226938
Number of successful extensions: 565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)