Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f19
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-5|CAD59140.1|  594|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell death-re...    27   7.4  
Z82274-12|CAJ76931.1|  304|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z82274-11|CAB54268.2|  315|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    27   9.8  
AF324487-1|AAK49908.1|  315|Caenorhabditis elegans JC8.12-like p...    27   9.8  

>Z49909-5|CAD59140.1|  594|Caenorhabditis elegans Hypothetical
           protein C14A4.4b protein.
          Length = 594

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 272 SGLPTASFFHTTSSSIPTFNSIVFRSRNATS*L--RISSSLQCISKI 406
           +GLP A   +   +S PTFN+ + RS    + L  +++ S+ C  ++
Sbjct: 48  NGLPKAGADYELYNSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRV 94


>Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical
           protein C14A4.4a protein.
          Length = 876

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 272 SGLPTASFFHTTSSSIPTFNSIVFRSRNATS*L--RISSSLQCISKI 406
           +GLP A   +   +S PTFN+ + RS    + L  +++ S+ C  ++
Sbjct: 48  NGLPKAGADYELYNSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRV 94


>AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell
           death-related nuclease 3 protein.
          Length = 876

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 272 SGLPTASFFHTTSSSIPTFNSIVFRSRNATS*L--RISSSLQCISKI 406
           +GLP A   +   +S PTFN+ + RS    + L  +++ S+ C  ++
Sbjct: 48  NGLPKAGADYELYNSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRV 94


>Z82274-12|CAJ76931.1|  304|Caenorhabditis elegans Hypothetical
           protein JC8.12b protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +2

Query: 191 IAAVNYVISINRLPVYIYE*ITHILLPSGLPTASFFHTTSS----SIPTFNSI 337
           +  V  V+ I ++  Y +E   HI++PS L T S + T +S    ++P F+S+
Sbjct: 41  VIEVTRVLGILKVAPYCFEKGRHIVIPSILYTISQWITVASFEGIAMPNFDSV 93


>Z82274-11|CAB54268.2|  315|Caenorhabditis elegans Hypothetical
           protein JC8.12a protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +2

Query: 191 IAAVNYVISINRLPVYIYE*ITHILLPSGLPTASFFHTTSS----SIPTFNSI 337
           +  V  V+ I ++  Y +E   HI++PS L T S + T +S    ++P F+S+
Sbjct: 52  VIEVTRVLGILKVAPYCFEKGRHIVIPSILYTISQWITVASFEGIAMPNFDSV 104


>Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.7 protein.
          Length = 307

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 77  RLLSCY*RHSPRITANTAAIPDRADEPNDQFPVQSSFEIAAVNYVISI 220
           ++ SCY  + P  T  ++   DR  E  +QF V S   +A ++ +I++
Sbjct: 141 KIFSCYIIYDPETTIFSSENYDRCGEAMNQFFVISIVTLALISNLINL 188


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 444 DSLSHSRMVLETPILDMHWRLEEIRNQLVAFRDLNTMELKVGILE 310
           DSL    ++L+  ++     +E++RN+ VA R  N  EL  G LE
Sbjct: 36  DSLVKKNLLLKQQVVQCTKTIEKLRNENVALRQKN-QELIDGTLE 79


>AF324487-1|AAK49908.1|  315|Caenorhabditis elegans JC8.12-like
           protein protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +2

Query: 191 IAAVNYVISINRLPVYIYE*ITHILLPSGLPTASFFHTTSS----SIPTFNSI 337
           +  V  V+ I ++  Y +E   HI++PS L T S + T +S    ++P F+S+
Sbjct: 52  VIEVTRVLGILKVAPYCFEKGRHIVIPSILYTISQWITVASFEGIAMPNFDSV 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,470,972
Number of Sequences: 27780
Number of extensions: 194139
Number of successful extensions: 448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)