Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f19
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42060.1 68416.m04315 myosin heavy chain-related                    31   0.57 
At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP...    30   0.99 
At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP...    30   0.99 
At5g12970.1 68418.m01487 C2 domain-containing protein contains I...    28   4.0  
At1g04150.1 68414.m00405 C2 domain-containing protein contains I...    28   5.3  
At3g03680.1 68416.m00371 C2 domain-containing protein contains I...    27   7.0  

>At3g42060.1 68416.m04315 myosin heavy chain-related
          Length = 712

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 471 DKGKEGKRGDSLSHSRMVLETPILDMHWRLEEIRNQLVAFR 349
           D+  E  R D+++  R  + T I D H R+E +RN ++  R
Sbjct: 593 DRHYEKSREDAVAVERRKVVTEIEDSHARIERLRNHIIGLR 633


>At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP1)
           identical to biotin carboxyl carrier protein of
           acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
           gi|9759121|dbj|BAB09606
          Length = 254

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 25/95 (26%), Positives = 42/95 (44%)
 Frame = -1

Query: 534 NNPDTDKNH*ALVLGGTDKVEDKGKEGKRGDSLSHSRMVLETPILDMHWRLEEIRNQLVA 355
           N   T  +  A  + G    E K K   +  S S   +  E  I +   ++  +  +LV 
Sbjct: 65  NKVSTGASSNAAKVDGPSSAEGKEKNSLKESSASSPELATEESISEFLTQVTTLV-KLVD 123

Query: 354 FRDLNTMELKVGILELVV*KKLAVGSPLGKSMWVI 250
            RD+  ++LK    ELV+ KK A+  P   + +V+
Sbjct: 124 SRDIVELQLKQLDCELVIRKKEALPQPQAPASYVM 158


>At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP1)
           identical to biotin carboxyl carrier protein of
           acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
           gi|9759121|dbj|BAB09606
          Length = 280

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 25/95 (26%), Positives = 42/95 (44%)
 Frame = -1

Query: 534 NNPDTDKNH*ALVLGGTDKVEDKGKEGKRGDSLSHSRMVLETPILDMHWRLEEIRNQLVA 355
           N   T  +  A  + G    E K K   +  S S   +  E  I +   ++  +  +LV 
Sbjct: 65  NKVSTGASSNAAKVDGPSSAEGKEKNSLKESSASSPELATEESISEFLTQVTTLV-KLVD 123

Query: 354 FRDLNTMELKVGILELVV*KKLAVGSPLGKSMWVI 250
            RD+  ++LK    ELV+ KK A+  P   + +V+
Sbjct: 124 SRDIVELQLKQLDCELVIRKKEALPQPQAPASYVM 158


>At5g12970.1 68418.m01487 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 769

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +2

Query: 98  RHSP----RITANTAAIPDRADEPNDQFPVQSSFEIAAVNY 208
           RH P    R++   A  PD  DE  D FP   S EI  + Y
Sbjct: 634 RHPPHMDTRLSHADAVHPDELDEEFDTFPTSRSSEIVRMRY 674


>At1g04150.1 68414.m00405 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1012

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 110 RITANTAAIPDRADEPNDQFPVQSSFEIAAVNY 208
           RI+      PD  DE  D FP    F++  + Y
Sbjct: 885 RISHAETVFPDELDEEFDTFPTSRGFDVVRMRY 917


>At3g03680.1 68416.m00371 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1017

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 107 PRITANTAAIPDRADEPNDQFPVQSSFEIAAVNY 208
           PR++   +  PD  DE  D FP     E+  + Y
Sbjct: 889 PRLSCVDSVAPDELDEEFDGFPTTRQPEVVRIRY 922


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,945,252
Number of Sequences: 28952
Number of extensions: 180471
Number of successful extensions: 464
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)