Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10f18
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0413 + 33756151-33756475,33756837-33756945,33757004-337570... 32 0.36
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773... 31 0.83
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149... 31 1.1
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 30 1.9
08_01_0629 + 5464282-5464304,5464367-5465528 29 3.3
09_04_0378 - 17091407-17092369 28 5.9
01_06_1104 - 34551466-34551572,34552019-34553057 28 5.9
04_03_0141 + 11767781-11767880,11767953-11769262 28 7.7
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 28 7.7
01_01_0338 + 2718212-2718251,2718519-2718607,2718997-2719050,271... 28 7.7
>03_06_0413 +
33756151-33756475,33756837-33756945,33757004-33757058,
33757059-33757094,33757196-33757282,33757737-33757808
Length = 227
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 72 CLRLNHLIITTVVCPMSRYSSSLIIEANFDAIESTNG 182
CL ++H+II++ V + S+L+ + +FDA E T G
Sbjct: 32 CLDVHHIIISSGVILELNFGSALVFDDSFDAGEQTRG 68
>02_05_0492 -
29476883-29476949,29477030-29477166,29477292-29477383,
29477490-29477587,29477677-29477804,29477883-29478026,
29478108-29478397,29478553-29478739,29479085-29479210,
29480488-29480538,29480952-29481002,29482639-29484054
Length = 928
Score = 31.1 bits (67), Expect = 0.83
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 325 LSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQR 441
+SS++P N P ++A ++ E LP+EF C ++
Sbjct: 644 VSSVMPTNRAPETMMAEQLENIKEETEDLPSEFACSTKK 682
>06_01_0193 -
1491710-1491739,1492194-1492319,1492631-1492766,
1493048-1493112,1493213-1493305,1493433-1493498,
1493763-1493843,1493977-1494032,1494692-1494780,
1495340-1495425,1495531-1495647,1496109-1496254,
1496665-1496725,1496831-1496914,1497028-1497135,
1497286-1497388,1497802-1497845,1498100-1498584,
1499417-1499603,1500150-1500362,1501066-1501323
Length = 877
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -1
Query: 392 GARAISFASILMGQSLAGTILDNGTISRSLGTAIGSNIFWLGTIT 258
G+RAI++ +M ++ TIL+ G +S L GS W+ +++
Sbjct: 409 GSRAINYILTVMVFNVVPTILEIGMVSSILAYKFGSTFAWITSVS 453
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 125 SGHWAYDCCDDKMIETQTKMTLILPIVWRSVILSTAS 15
SG + C+D+++ + K+ LI P+ WR ST S
Sbjct: 486 SGMMHFHPCEDEVLTEKDKLLLIAPVSWRRRAQSTFS 522
>08_01_0629 + 5464282-5464304,5464367-5465528
Length = 394
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 146 NNEARAVSGHWAYDCCDDKMIETQTKMTLILPIVWRS 36
NN A GHW +DC ++ + +L+L ++WR+
Sbjct: 131 NNLASTDYGHWLFDCLENL---ADSGRSLLLMVLWRN 164
>09_04_0378 - 17091407-17092369
Length = 320
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = -1
Query: 467 HSTRGRVKVR*QSHGNSFGSTRT-SIGARAISFASILMGQSLAGTILDNGTISRSLGTAI 291
H GRV + S G + T ++G R + +++ + GTIL + + +
Sbjct: 150 HGDTGRVFLSGASAGGNIAHNMTIAVGVRGLD--AVVPAPRIEGTILLHPSFCGETRMEV 207
Query: 290 GSNIFWLGTITRLDLIISGAN 228
FW G R +I GAN
Sbjct: 208 EPEEFWGGVKKRWAVIFPGAN 228
>01_06_1104 - 34551466-34551572,34552019-34553057
Length = 381
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 419 SFGSTRTSIGARAISFASILMGQSLAGTILDNGTIS 312
S GS ++ ++ +FA++ LAGT + NG IS
Sbjct: 189 SLGSRVATLLSKGATFAAVGFAAGLAGTAISNGLIS 224
>04_03_0141 + 11767781-11767880,11767953-11769262
Length = 469
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 548 HPKCTPRGSQRGNPYLPIASPISALSTTSSNFLPPP 655
H + PR Q G P+ P A+P S +SS+ PPP
Sbjct: 323 HKQYKPR-LQLGAPHAPRAAPSSHPGASSSSARPPP 357
>02_01_0297 +
1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 8 LKH*LSIR*QISKQWEELESSLFASQSSYHHNSRMPNVQIQ 130
L H IR Q S Q +++ S Q+ YH N + PN Q Q
Sbjct: 420 LTHEQLIRQQHSMQQHQMQPSSQFVQNQYHLNQQQPNSQHQ 460
>01_01_0338 +
2718212-2718251,2718519-2718607,2718997-2719050,
2719201-2719271,2719375-2719456,2719561-2719657,
2719752-2719873
Length = 184
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Frame = +2
Query: 458 EWNVKLNQSY-----LLSNIPLTSSTEALRS*ITCHPKCTPRG 571
+WN + SY L +P + AL+ +TC P C P G
Sbjct: 124 KWNFSFDFSYASILSLAVYVPGSDKNTALQDRLTCSPTCLPNG 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,678,734
Number of Sequences: 37544
Number of extensions: 444913
Number of successful extensions: 1349
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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