Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f18
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38322| Best HMM Match : Neuroparsin (HMM E-Value=2)                 40   0.001
SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2)                 31   0.85 
SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_35080| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_28634| Best HMM Match : IncA (HMM E-Value=7.9)                      30   1.5  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   1.5  
SB_43232| Best HMM Match : Morbilli_P (HMM E-Value=4.2)                29   2.6  
SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_16206| Best HMM Match : Planc_extracel (HMM E-Value=10)             28   6.0  

>SB_38322| Best HMM Match : Neuroparsin (HMM E-Value=2)
          Length = 317

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 27/84 (32%), Positives = 42/84 (50%)
 Frame = +1

Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
           V VPS      + VP  +   P+S  VP+  CP+ +    I + P+ V V P+     CQ
Sbjct: 176 VTVPSIQCPVSVTVPSIQ--CPVSVTVPSIQCPVSVTVPSI-QCPVSVTV-PS---IQCQ 228

Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
            ++T P ++CQ    +PF Q  V+
Sbjct: 229 VSVTVPSIQCQVSVTVPFIQCQVS 252



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 26/84 (30%), Positives = 41/84 (48%)
 Frame = +1

Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
           V VPS      + VP  +   P+S  VP+  CP+ +    I + P+ V V P+     CQ
Sbjct: 99  VTVPSIQCQVSVTVPSIQ--CPVSVTVPSIQCPVSVTVPSI-QCPVSVTV-PS---IQCQ 151

Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
            ++T P ++C     +P  Q PV+
Sbjct: 152 VSVTVPSIQCPVSVTVPSIQCPVS 175



 Score = 34.7 bits (76), Expect = 0.069
 Identities = 25/84 (29%), Positives = 40/84 (47%)
 Frame = +1

Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
           V VPS      + VP  +    +S  VP+  CP+ +    I + P+ V V P+     C 
Sbjct: 88  VTVPSIQCPVSVTVPSIQ--CQVSVTVPSIQCPVSVTVPSI-QCPVSVTV-PS---IQCP 140

Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
            ++T P ++CQ    +P  Q PV+
Sbjct: 141 VSVTVPSIQCQVSVTVPSIQCPVS 164



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 25/84 (29%), Positives = 39/84 (46%)
 Frame = +1

Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
           V VPS      + VP  +    +S  VP   CP+ +    I + P+ V V P+     CQ
Sbjct: 55  VTVPSIQCQVSVTVPFIQ--CQVSVTVPFIQCPVSVTVPSI-QCPVSVTV-PS---IQCQ 107

Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
            ++T P ++C     +P  Q PV+
Sbjct: 108 VSVTVPSIQCPVSVTVPSIQCPVS 131



 Score = 32.3 bits (70), Expect = 0.37
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +1

Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
           V VPS      + VP  +   P+S  VP+  CP+ +    I +  + V V P+     C 
Sbjct: 110 VTVPSIQCPVSVTVPSIQ--CPVSVTVPSIQCPVSVTVPSI-QCQVSVTV-PS---IQCP 162

Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
            ++T P ++C     +P  Q PV+
Sbjct: 163 VSVTVPSIQCPVSVTVPSIQCPVS 186



 Score = 32.3 bits (70), Expect = 0.37
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +1

Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
           V VPS      + VP  +   P+S  VP+  C + +    I + P+ V V P+     C 
Sbjct: 121 VTVPSIQCPVSVTVPSIQ--CPVSVTVPSIQCQVSVTVPSI-QCPVSVTV-PS---IQCP 173

Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
            ++T P ++C     +P  Q PV+
Sbjct: 174 VSVTVPSIQCPVSVTVPSIQCPVS 197



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
 Frame = +1

Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEI-----ARAP-IEVRVLPNE 420
           V VPS      + VP  +   P+S  VP+  C + +    I        P I+ +V    
Sbjct: 198 VTVPSIQCPVSVTVPSIQ--CPVSVTVPSIQCQVSVTVPSIQCQVSVTVPFIQCQVSVTV 255

Query: 421 FPCDCQRTLTRPRVECQTQSVIPFEQYPVN 510
               CQ ++T P ++CQ    +PF Q  V+
Sbjct: 256 PFIQCQVSVTVPSIQCQVSVTVPFIQCQVS 285



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/84 (28%), Positives = 38/84 (45%)
 Frame = +1

Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
           V VPS      + VP  +    +S  VP   C + +    I +  + V V P+     CQ
Sbjct: 220 VTVPSIQCQVSVTVPSIQ--CQVSVTVPFIQCQVSVTVPFI-QCQVSVTV-PS---IQCQ 272

Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
            ++T P ++CQ    +P  Q PV+
Sbjct: 273 VSVTVPFIQCQVSVTVPSIQCPVD 296


>SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2)
          Length = 638

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 249 LNHFRGKHRSARILCGRFNSLYCH 178
           L+HF+G  R A I  G FN L CH
Sbjct: 551 LHHFQGLKRQAAIALGFFNRLICH 574


>SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
 Frame = -1

Query: 461  TRGRVKVR*QSHGNSFGSTRTSIGARAISFASILMGQSLAGTIL-DNGTISRSLGTAIGS 285
            TRG++  R      + G T+  +         +L+     G ++ D+G   R +G  +  
Sbjct: 784  TRGKILERFDKKLATTGCTKKDLFEMEKKLEIMLVAVDALGNVMWDSGKYERGVGQHLEQ 843

Query: 284  NIFWLGTITRLDLIISGANIVLPVSSAADLIACIAIGAFDGVK 156
            N  W+ T+   DL+ SG    L +++A +++   ++G  D +K
Sbjct: 844  NEGWITTLELKDLLDSGD---LVMAAAREVL--YSVGKKDSIK 881


>SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 25/82 (30%), Positives = 34/82 (41%)
 Frame = +3

Query: 105 VVCPMSRYSSSLIIEANFDAIESTNGNTSY*ICRRGYGQNDVCPGND*VETGYCAKPEYV 284
           ++ PM  Y  SL I A FD    T GN+S  +  RG       P  D + +  C +P  V
Sbjct: 541 LLTPMRSYHYSLRIIAGFDNTVVTMGNSSGNVLDRGGFTEQRVPPGDGLSSVLCKQPCLV 600

Query: 285 XXXXXXXXXXXXPIIQYRAGQR 350
                       PI  +R G+R
Sbjct: 601 --VKYTIYDSCYPISSHRIGKR 620


>SB_35080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 249 LNHFRGKHRSARILCGRFNSLYCH 178
           L+HF+G  R A I  G FN L CH
Sbjct: 5   LHHFQGLKRQAAIALGFFNRLICH 28


>SB_28634| Best HMM Match : IncA (HMM E-Value=7.9)
          Length = 446

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 464 NVKLNQSYLLSNIPLTSSTEALRS*ITCHPKCTPRGSQRGNPYLPI-ASPISALSTTSS 637
           ++   QS+L  NIP TSST   +  I   P+ TP   +  N   P+  S +SA+  T+S
Sbjct: 83  SIGTEQSHL--NIPSTSSTLPTQQPIPTDPEVTPARPRLNNTANPLHTSNVSAVENTTS 139


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = +1

Query: 250  SRRVIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPC 429
            S+ + VP++ + +PI VP E+   P++ +      PI +   ++++ PI V       P 
Sbjct: 1677 SQPITVPNEQVSQPITVPDEQVSQPITVLDEQILQPITVPDEQVSQ-PITVPDEQVSQPI 1735

Query: 430  DCQRTLTRPRVECQTQSVIPF--EQYPVNE 513
              Q      ++  Q +   PF  ++YP+ E
Sbjct: 1736 TVQNKKDSQQIAVQDERTEPFTRQKYPLFE 1765


>SB_43232| Best HMM Match : Morbilli_P (HMM E-Value=4.2)
          Length = 362

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = -1

Query: 410 STRTSIGARAISFASILMGQSLAGTILDNG---TISRSL-GTAIGSN 282
           S  T IG    S  ++L G++LAGT  D+G   T+ ++L GT+I S+
Sbjct: 219 SDNTLIGTSRDSEITVLSGETLAGTSRDSGITVTLDKTLAGTSIDSD 265


>SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
 Frame = -1

Query: 398 SIGARAISFASILMGQSLAGTIL----DNGTISRSLGTAIGSNIFWLGTITRLDLIISGA 231
           SIGA A  FAS+L     A  +L     +G I   L     S    L ++  + +I   +
Sbjct: 311 SIGATAAIFASLLASYYAASRLLYSLSYDGLICMFLNKINKSRQVPLNSVIAVGVITGLS 370

Query: 230 NIVLPVSSAADLIACIAIGAFDGVKICL 147
           ++V  +    +L+A   I  +  V +C+
Sbjct: 371 SLVFNMRELVELVAVATICTYTSVSVCV 398


>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 371 QTK*HVRQSKCAYYQMSFRVIVNEL*HDLEWNVKL-NQSYLLSNIPLTSSTEALRS*ITC 547
           QTK H  + +  YY    RV ++ L    +  ++  ++ Y+L +I  +S T  LR  IT 
Sbjct: 251 QTKTHFYEEQIDYYNQYIRVCLDNLSKKGKLELRFESELYILFSILFSSHTPLLRVAITN 310

Query: 548 HPKCTPRGSQRG 583
               T + S RG
Sbjct: 311 ASVSTRKPSGRG 322


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +1

Query: 94   SSQQSYAQCPDTALASLLRQILTPSKAPMAIQAIKSAAEDTGRTMFAPEMIKSRRVIV-P 270
            S+ ++ A+ PDT +A +    L  +KAP    A +S       T  APE   +    V P
Sbjct: 5043 SAMETTAEAPDTTMAPVSTVALETTKAPETTVAPESTM--APETTVAPETTMAPETTVSP 5100

Query: 271  SQNMFEPIAVPREREIVPLSSIVP 342
               M     V  E    P +++ P
Sbjct: 5101 ETTMAPGTTVASETTEAPGTTVAP 5124


>SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +1

Query: 40  LQTMGRIRVIFVCVSIILSSQQSYAQCPDTALASLLRQILTPSKAPMAIQAIKSAAEDTG 219
           L+   R R+++  V   +  Q   A+  D A ++ +  +  P+K+ ++       AE TG
Sbjct: 14  LRISTRARLLYGKVKSFVEDQVIPAE-KDKARSAGMWNLFLPAKSGLSQLEYALIAEQTG 72

Query: 220 RTMFAPEM 243
           R+++APE+
Sbjct: 73  RSLYAPEV 80


>SB_16206| Best HMM Match : Planc_extracel (HMM E-Value=10)
          Length = 219

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 340 PANDCPIRILANEIARAPIEVRVLPNEFPCDCQRTLTR--PRVECQTQSVI 486
           P   CP  I   E       +R LP  + CDC RT +   P ++ +T  V+
Sbjct: 163 PYGYCPRAIRLTEPLPPRSMLRALPRHYDCDCIRTRSAMLPPIDGRTSPVL 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,667,338
Number of Sequences: 59808
Number of extensions: 523461
Number of successful extensions: 1481
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)