Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f18
         (668 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X90569-1|CAA62189.1| 7962|Homo sapiens elastic titin protein.          36   0.17 
AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.                36   0.17 
EF212155-1|ABN05231.1|  391|Homo sapiens cellular titin isoform ...    33   0.70 
AL353779-1|CAI20975.1|  250|Homo sapiens chromosome 1 open readi...    31   3.7  
AK095734-1|BAC04618.1|  515|Homo sapiens NA.  protein.                 30   8.6  
AB070238-1|BAB85125.1|  576|Homo sapiens nuclear matrix transcri...    30   8.6  

>X90569-1|CAA62189.1| 7962|Homo sapiens elastic titin protein.
          Length = 7962

 Score = 35.5 bits (78), Expect = 0.17
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
 Frame = +1

Query: 235  PEMIKSRRVIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIA--RAPIEVRV 408
            P+ ++ +R+I+P +    P+ V  E E  P+S      + P      E+A  R P  ++ 
Sbjct: 6881 PKKVEEKRIILPKEEEVLPVEVTEEPEEEPISEEEIPEEPPSIEEVEEVAPPRVPEVIKK 6940

Query: 409  LPNEFPCDCQRTLTRPRVECQTQSVIPFEQYPVNEFYRSAPVVNYMS-PQMYPERQ 573
               E P    + +  P    +    IP E+ PV    + AP       P+  PE++
Sbjct: 6941 AVPEAPTPVPKKVEAP--PAKVSKKIPEEKVPVPVQKKEAPPAKVPEVPKKVPEKK 6994


>AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.
          Length = 30000

 Score = 35.5 bits (78), Expect = 0.17
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
 Frame = +1

Query: 235   PEMIKSRRVIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIA--RAPIEVRV 408
             P+ ++ +R+I+P +    P+ V  E E  P+S      + P      E+A  R P  ++ 
Sbjct: 11143 PKKVEEKRIILPKEEEVLPVEVTEEPEEEPISEEEIPEEPPSIEEVEEVAPPRVPEVIKK 11202

Query: 409   LPNEFPCDCQRTLTRPRVECQTQSVIPFEQYPVNEFYRSAPVVNYMS-PQMYPERQ 573
                E P    + +  P    +    IP E+ PV    + AP       P+  PE++
Sbjct: 11203 AVPEAPTPVPKKVEAP--PAKVSKKIPEEKVPVPVQKKEAPPAKVPEVPKKVPEKK 11256


>EF212155-1|ABN05231.1|  391|Homo sapiens cellular titin isoform
           PEVK variant 3 protein.
          Length = 391

 Score = 33.5 bits (73), Expect = 0.70
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = +1

Query: 235 PEMIKSRRVIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIA--RAPIEVRV 408
           P+ ++ +R+I+P +    P+ V  E E  P+S      + P      E+A  R P  ++ 
Sbjct: 286 PKKVEEKRIILPKEEEVLPVEVTEEPEEEPISEEEIPEEPPSIEEVEEVAPPRVPEVIKK 345

Query: 409 LPNEFPCDCQRTLTRPRVECQTQSVIPFEQYPVNEFYRSAP 531
              E P    + +  P    +    IP E+ PV    + AP
Sbjct: 346 AVPEAPTPVPKKVEAP--PAKVSKKIPEEKVPVPVQKKEAP 384


>AL353779-1|CAI20975.1|  250|Homo sapiens chromosome 1 open reading
           frame 68 protein.
          Length = 250

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
 Frame = +1

Query: 424 PCDCQRTLTRPRVECQTQSVIPFEQYPVNEFYRSAPVVNYMSPQMYPERQPAGEPLSAH- 600
           P  CQ T  +    CQTQ+       P   +Y  AP     S   Y    P   P S   
Sbjct: 113 PAPCQMTYIKSPAPCQTQTCYVQGASPCQSYYVQAPASG--STSQYCVTDPCSAPCSTSY 170

Query: 601 -CFS----NISPFDDVIQFFTTANTGA 666
            C +     +SP    IQ     NTG+
Sbjct: 171 CCLAPRTFGVSPLRRWIQRPQNCNTGS 197


>AK095734-1|BAC04618.1|  515|Homo sapiens NA.  protein.
          Length = 515

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +2

Query: 476 NQSYLLSNIPLTS--STEALRS*ITCHPKCTPRGSQRGNPYLPIASPISALSTTSSNFLP 649
           +Q+ +  NI +    ST  + + ++C  +    GSQ   P L I SP  +L TT+S+   
Sbjct: 80  SQASVTQNITVVPVPSTGLMTAGVSCSQRWRREGSQSRGPGLVITSPSGSLVTTASSAQT 139

Query: 650 PPTQA 664
            P  A
Sbjct: 140 FPISA 144


>AB070238-1|BAB85125.1|  576|Homo sapiens nuclear matrix
           transcription factor4 protein.
          Length = 576

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +2

Query: 476 NQSYLLSNIPLTS--STEALRS*ITCHPKCTPRGSQRGNPYLPIASPISALSTTSSNFLP 649
           +Q+ +  NI +    ST  + + ++C  +    GSQ   P L I SP  +L TT+S+   
Sbjct: 80  SQASVTQNITVVPVPSTGLMTAGVSCSQRWRREGSQSRGPGLVITSPSGSLVTTASSAQT 139

Query: 650 PPTQA 664
            P  A
Sbjct: 140 FPISA 144


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,030,464
Number of Sequences: 237096
Number of extensions: 2365930
Number of successful extensions: 5926
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5924
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)