Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f18
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z71265-2|CAA95834.2|  128|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF043699-1|AAB97563.2|  202|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF038613-12|AAB92046.3|  328|Caenorhabditis elegans Hypothetical...    29   3.0  
Z73104-8|CAA97436.2|  108|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical p...    28   5.2  
U40945-2|AAA81720.1|  445|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine pyro...    28   5.2  
AF125955-6|AAD14714.1|  168|Caenorhabditis elegans Hypothetical ...    28   5.2  
AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z81517-8|CAM84818.1|  357|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    28   6.9  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    28   6.9  
U49830-6|AAK31481.1|  964|Caenorhabditis elegans Neuronal igcam ...    27   9.1  
U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam ...    27   9.1  
U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam ...    27   9.1  
AC024214-3|AAU05554.1|  577|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical protein
            F15D4.1 protein.
          Length = 1529

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 228  HRSARILCGRFNSLYCHWCFRWRQNLPQ 145
            HR + I+C R  +L  HWC  W +  PQ
Sbjct: 1034 HRCSLIVCPR--TLVDHWCLEWNRFFPQ 1059


>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical protein
            F15D4.1 protein.
          Length = 1529

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 228  HRSARILCGRFNSLYCHWCFRWRQNLPQ 145
            HR + I+C R  +L  HWC  W +  PQ
Sbjct: 1034 HRCSLIVCPR--TLVDHWCLEWNRFFPQ 1059


>Z71265-2|CAA95834.2|  128|Caenorhabditis elegans Hypothetical
           protein M05B5.2 protein.
          Length = 128

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 75  LRLNHLIITTVVCPMSRYSSSL-IIEANFDAIESTNGNTSY*ICRRGYGQNDVCP 236
           +RL HL    V+C +  Y++   + +     IE   GN     C  GYG    CP
Sbjct: 3   IRLRHLAFAAVLCTLCYYANGQGLNDPITQYIEGRLGNRRIFWCPSGYGYLAFCP 57


>AF043699-1|AAB97563.2|  202|Caenorhabditis elegans Hypothetical
           protein K02F2.5 protein.
          Length = 202

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 229 FAPEMIKSRRVIVPSQNMFEPIA-VPREREIVPLSSIVPANDCPIRILAN-EIARAPIEV 402
           + PE +++  VI   + + +PI  +PR+R  VP+      ND P +   N E+   P E 
Sbjct: 107 YNPESVEAYEVIELPEYLTQPIEYMPRDRRSVPVFEAYDENDLPEQFEENQEVIFVPEEA 166

Query: 403 RV 408
            +
Sbjct: 167 LI 168


>AF038613-12|AAB92046.3|  328|Caenorhabditis elegans Hypothetical
           protein F42A6.1 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 289 PIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEF 423
           P A PR + IVP S  +     P R+L  EI++ P+ +  LP+ F
Sbjct: 286 PKASPR-KSIVPRSGSIVGIQKP-RVLQQEISKGPLHLPPLPSRF 328


>Z73104-8|CAA97436.2|  108|Caenorhabditis elegans Hypothetical
           protein K08D8.1 protein.
          Length = 108

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 496 QYPVNEFYRSAPVVNYMSPQMYPERQPAGEP 588
           QYP    + + P  +  +  +YP  Q AGEP
Sbjct: 32  QYPTTSHFEAPPAYSDSTNNVYPPTQVAGEP 62


>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical
           protein M18.5 protein.
          Length = 1134

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = -1

Query: 374 FASILMGQSLAGTILDNGTISRSLGTAIGSNIFWLGT----ITRLDLIISGANIVLPVSS 207
           FAS L G + +G IL        L ++ G + FW  T    I+++ +  +   IVL    
Sbjct: 451 FASTLFGPNDSGIILQATEKQIRLMSSSGLSKFWEPTNGEIISKVSVNAANGQIVLAARD 510

Query: 206 AADLIACIA--IGAFD 165
              L+ CI   +GA D
Sbjct: 511 TVYLLTCIVDEMGALD 526


>Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical
           protein ZK637.9a protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 176 GAFDGVKICLNNEARAVSGHWAYDCCDDKMIETQTKMTLILPIVWRSVILST 21
           G FD     L++  R V      D   D  +E  TKM  I+PIV +  I+S+
Sbjct: 124 GRFDHTMSTLSSLIRFVDSQTPGDSNLDVNLEMTTKMCGIIPIVQKETIVSS 175


>U40945-2|AAA81720.1|  445|Caenorhabditis elegans Hypothetical
           protein F10D7.2 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 347 LAGTILDNGTISRSLGTAIGSNIFWL 270
           LAG     G ++R+LG  I S  FWL
Sbjct: 387 LAGIFRSLGCLARALGPVISSTFFWL 412


>AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine
           pyrophosphokinase protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 176 GAFDGVKICLNNEARAVSGHWAYDCCDDKMIETQTKMTLILPIVWRSVILST 21
           G FD     L++  R V      D   D  +E  TKM  I+PIV +  I+S+
Sbjct: 124 GRFDHTMSTLSSLIRFVDSQTPGDSNLDVNLEMTTKMCGIIPIVQKETIVSS 175


>AF125955-6|AAD14714.1|  168|Caenorhabditis elegans Hypothetical
           protein F46E10.3 protein.
          Length = 168

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -1

Query: 449 VKVR*QSHGNSFGSTRTSIGARAISFASILMGQSLAGTILDNGTISRSL 303
           +K++ +S GNS+G  + +     ++  + LM   ++GT++ N    R+L
Sbjct: 6   LKIKHESKGNSYGVCKKTPERICLTSKNELMEVCISGTVISNEQYERNL 54


>AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical
           protein Y20F4.2 protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +2

Query: 350 IVPSEYWQTK*HVRQSKCAYYQMSFRVIVNEL*HDLEWNVKLNQS--YLLSNIPLTSSTE 523
           +VP E W      R S  A + M   V ++   H  +  +  +Q   YL +++P  S   
Sbjct: 165 LVPPESWNQINRAR-SDPAIHNMGGMVPMHPH-HHQQQQMAFHQMPHYLQNSMPGPSGMM 222

Query: 524 ALRS*ITCH-PKCTPRGSQRGNP 589
           A  S    H P+ TP+GSQ+G+P
Sbjct: 223 APNSQSQQHSPQLTPQGSQQGSP 245


>Z81517-8|CAM84818.1|  357|Caenorhabditis elegans Hypothetical
           protein F28B1.9 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +2

Query: 431 IVNEL*HDLEWNVKLNQSYLLSNIPLTSSTEALRS*ITCHPKCTPRGSQRGNPYLPIASP 610
           ++N+L  DL+W  ++  +Y  + + ++S T A    ITC     P      NP + I   
Sbjct: 265 VINKL-EDLKWYHQVG-AYSTAQVGISSWTPAFEFEITCEDGFKPVVFSENNPPIEIPDS 322

Query: 611 ISALSTT 631
           +  +  T
Sbjct: 323 VPTIKCT 329


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
            F36H2.3 protein.
          Length = 1388

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 557  CTPRGSQRGNPYLPIASPISALSTTSSNFLPPPT 658
            CT  G+  G  Y P  +P+ A  T SS +  P T
Sbjct: 1245 CTSSGTGTGPCYTPPLTPVGATLTYSSGYFAPWT 1278


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
            protein R148.3a protein.
          Length = 1115

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 584  NPYLPIASPISALSTTSSNFLP 649
            NPYLP +S  S +ST+   FLP
Sbjct: 1035 NPYLPGSSDSSFMSTSQPQFLP 1056


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
            protein R148.3b protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 584  NPYLPIASPISALSTTSSNFLP 649
            NPYLP +S  S +ST+   FLP
Sbjct: 1047 NPYLPGSSDSSFMSTSQPQFLP 1068


>U49830-6|AAK31481.1|  964|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform a protein.
          Length = 964

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 529 PVVNYMSPQMYPERQPAGEPLSAHCFSNISP 621
           P ++   PQ++PE    G+ +   CF+  SP
Sbjct: 116 PKLDSTQPQIFPEDPKVGDSIYLECFAYASP 146


>U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform b protein.
          Length = 1227

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 529 PVVNYMSPQMYPERQPAGEPLSAHCFSNISP 621
           P ++   PQ++PE    G+ +   CF+  SP
Sbjct: 379 PKLDSTQPQIFPEDPKVGDSIYLECFAYASP 409


>U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform d protein.
          Length = 1196

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 529 PVVNYMSPQMYPERQPAGEPLSAHCFSNISP 621
           P ++   PQ++PE    G+ +   CF+  SP
Sbjct: 348 PKLDSTQPQIFPEDPKVGDSIYLECFAYASP 378


>AC024214-3|AAU05554.1|  577|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7c protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 148 RQILTPSKAPMAIQAIKSAAEDTGRTMFAPEM-IKSRRVIVPSQNMFEPIAVPREREIVP 324
           R++ TPS   +A +  +   +        P+  I ++   VP     EP++V +ER++ P
Sbjct: 4   RKVRTPSAKLLAAKQDEVFEKVIPTAQLTPKSTISAQMAKVPESTTPEPLSVDQERDMTP 63

Query: 325 LSSIV 339
            +S++
Sbjct: 64  DASVL 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,222
Number of Sequences: 27780
Number of extensions: 381548
Number of successful extensions: 1147
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)