Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10f15
(112 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 0.79
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 3.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 3.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 3.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 3.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 3.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 3.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 3.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 3.2
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 19 7.4
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 18 9.8
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 18 9.8
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 18 9.8
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 18 9.8
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.8 bits (44), Expect = 0.79
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 60 NFECERARRVAQGCRPRGE 4
+F R R A CR RGE
Sbjct: 438 SFRKRRQREAAGNCRKRGE 456
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -3
Query: 80 FLQWLXIILNVKERG 36
FLQWL +L + G
Sbjct: 299 FLQWLPCLLRMSRPG 313
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -3
Query: 80 FLQWLXIILNVKERG 36
FLQWL +L + G
Sbjct: 299 FLQWLPCLLRMSRPG 313
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -3
Query: 80 FLQWLXIILNVKERG 36
FLQWL +L + G
Sbjct: 299 FLQWLPCLLRMSRPG 313
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -3
Query: 80 FLQWLXIILNVKERG 36
FLQWL +L + G
Sbjct: 299 FLQWLPCLLRMSRPG 313
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -3
Query: 80 FLQWLXIILNVKERG 36
FLQWL +L + G
Sbjct: 299 FLQWLPCLLRMSRPG 313
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -3
Query: 80 FLQWLXIILNVKERG 36
FLQWL +L + G
Sbjct: 299 FLQWLPCLLRMSRPG 313
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -3
Query: 80 FLQWLXIILNVKERG 36
FLQWL +L + G
Sbjct: 367 FLQWLPCLLRMSRPG 381
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -3
Query: 80 FLQWLXIILNVKERG 36
FLQWL +L + G
Sbjct: 367 FLQWLPCLLRMSRPG 381
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 18.6 bits (36), Expect = 7.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 28 RDAPRSFTFKIIXNHCKNSLCNNKKY 105
R+ RS KII + ++ NN Y
Sbjct: 304 RERERSKESKIISSLSNKTIHNNNNY 329
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 18.2 bits (35), Expect = 9.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 40 RSFTFKIIXNHCKNSLCNNKKY 105
RS KII + N++ NN Y
Sbjct: 297 RSREPKIISSLLNNTIHNNNNY 318
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 18.2 bits (35), Expect = 9.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 40 RSFTFKIIXNHCKNSLCNNKKY 105
RS KII + N++ NN Y
Sbjct: 308 RSREPKIISSLLNNTIHNNNNY 329
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 18.2 bits (35), Expect = 9.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 40 RSFTFKIIXNHCKNSLCNNKKY 105
RS KII + N++ NN Y
Sbjct: 308 RSREPKIISSLLNNTIHNNNNY 329
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 18.2 bits (35), Expect = 9.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 40 RSFTFKIIXNHCKNSLCNNKKY 105
RS KII + N++ NN Y
Sbjct: 297 RSREPKIISSLLNNTIHNNNNY 318
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,286
Number of Sequences: 438
Number of extensions: 260
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 17
effective length of database: 138,897
effective search space used: 2639043
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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