Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10f12
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 27 2.5
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 3.3
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 25 5.7
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 25 5.7
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 5.7
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 7.5
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 25 7.5
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 10.0
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 10.0
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 25 10.0
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 10.0
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo... 25 10.0
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 2.5
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = -3
Query: 357 FGVWIGVLSSD-IVAPTRAGDLLSNH--FV*N*LNSS*APKEMLTL*APKQLTVPRVGLS 187
F WI V + + + P A DLLS + FV + +++ ++L+ +L V S
Sbjct: 192 FAPWIEVDARNALFNPDSADDLLSGNPDFVIDAIDNIQTKVDLLSYCYNHKLPVIA---S 248
Query: 186 TMNVCKSFKTRVRCDSVFVKKESNLNEQCLRRL 88
T + CKS TRV + E L+ RRL
Sbjct: 249 TGSACKSDPTRVNIADISATSEDPLSRATRRRL 281
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 101 HCSFKFDSFFTKTESHRTLVLKDLHTFIVLRPTLGTVSCLGA*RVNISL 247
H + KFD + + + LVL D+ I + +G V GA + ++L
Sbjct: 1221 HGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTL 1269
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/71 (21%), Positives = 32/71 (45%)
Frame = +2
Query: 338 TPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQGTVPT 517
TP Q+ + ++ SL+ I+ + L+P +N A+ L ++ + +P +
Sbjct: 64 TPEQSKQMFLYVAHSLQNSGIIDFEFSEELEPIRNAYADSLHNLLSKAFRSTLPMSSTKD 123
Query: 518 ASFSEEYLKPE 550
+ S Y P+
Sbjct: 124 SKKS-RYSSPD 133
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 431 PEKNQQANGLTGVIHQGNNGVMPQGTVPTAS 523
P Q +TG G NG P T PT S
Sbjct: 519 PNPTNQKVSITGAAADGPNGSAPVDTTPTNS 549
>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 432 GFKRSRSTTFKMFRVLRLVCEKTMSFG 352
GF S TTFK+F +L +C + + G
Sbjct: 83 GFPASPETTFKVFSLLDSLCLRLIQSG 109
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 334 QYTNPNTKRHGFFANESQDSKHFESSRPRSFKARK 438
+Y NPN R F N+ +F R F RK
Sbjct: 297 KYANPNLNRPPFLHNDQISDDYFPEIFKRHFLNRK 331
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +1
Query: 115 VRFLFYKNGITSNSSFERLAYIHCTQAYSRD 207
VR + + GIT F+ + Y H Y D
Sbjct: 275 VRLVSFAKGITLAKPFQHITYQHAIDKYGSD 305
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 24.6 bits (51), Expect = 10.0
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = +2
Query: 338 TPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQGTVPT 517
TP+Q KD F++++ + + LKP+ Q + + + N + P
Sbjct: 482 TPVQRRKDGKFAKSTKRKKQ-------KSLKPDTENQESSVKNKKAKSNVNLQYSPKTPI 534
Query: 518 ASFSEEYLKP 547
++E LKP
Sbjct: 535 CKINDETLKP 544
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 382 SQDSKHFESSRPRSFKARKEPTGERSNRSDSP 477
S S + ++ RP A+ + T R +RSDSP
Sbjct: 320 SFQSSYNDADRPFQVGAQTQSTPNRISRSDSP 351
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +2
Query: 257 EEFNQFYTKWLLKRSPARVGATISELN 337
EE+ +T W + +SP +G +S ++
Sbjct: 279 EEYKTHFTMWAILKSPLILGNDVSSMS 305
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 370 FANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPR 480
+AN D +H +SSR R KA T SN +++ +
Sbjct: 622 YANTLNDLRHLKSSRNR--KATSNETQSSSNSTETSK 656
>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 566
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 268 SILYKMVAQKITCPSRSDDIGTQYTNPNTKRHGFFAN 378
S L K + +K+ +D +G+Q + K H FF N
Sbjct: 451 SSLCKNLIRKLLVKDENDRLGSQAGAADVKLHPFFKN 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,311
Number of Sequences: 5004
Number of extensions: 41856
Number of successful extensions: 139
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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