Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f12
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)                   33   0.16 
SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)                     32   0.28 
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)                   29   2.6  
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)            29   2.6  
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7)                   29   3.4  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 28   5.9  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  27   7.9  
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
          Length = 648

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 261 SSINSIQNGCSKDHLPESERRYRNSIHQSKHQKTWFFRKRVSRLE 395
           S ++ IQ+G SKD   E++   ++ I ++ H K W  +  V  L+
Sbjct: 291 SKLDEIQDGLSKDEFAETQDGLKDQIKKNHHVKKWIVKAPVEILQ 335


>SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)
          Length = 284

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 262 VQSILYKMVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKE 441
           V+   YK         S+ D  G  YT+ N KR  F  N + ++K FE++  R  K    
Sbjct: 172 VKEKFYKFALTFAAAESKEDSNGVNYTDWNIKRIAFVVN-TTNNKDFENATERIIKVASN 230

Query: 442 PT 447
            T
Sbjct: 231 GT 232


>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
          Length = 653

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 262 VQSILYKMVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESS 411
           V+   YK         S+ D  G  YT+ N KR  F  N + ++K FE++
Sbjct: 53  VKEKFYKFALTFAAAESKEDSNGVNYTDWNIKRIAFVVN-TTNNKDFENA 101


>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
          Length = 446

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +1

Query: 310 SRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKAR------KEPTGERSNRSD 471
           S++DDI     N ++++   F N+  DS++ +     SF A       K PT   S  S 
Sbjct: 85  SQNDDISENNDNDDSQKDDDFPNDDDDSRNSDVDSRNSFDASRSEDACKNPTKVSSQDSR 144

Query: 472 SP 477
           SP
Sbjct: 145 SP 146


>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = +1

Query: 244 FRSSRRVQSILYKMVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRS 423
           F+SSR    IL   +   +TC S S    ++ ++ ++  +   +N S  S    SS   S
Sbjct: 95  FKSSRMFVYILIAFLVPYVTCTSSSSSNSSRSSSSSSNSN---SNSSSSSSSSSSSSSGS 151

Query: 424 FKARKEPTGERSNRSDS 474
             +    +   SN S S
Sbjct: 152 SSSSNSNSNSNSNSSSS 168


>SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7)
          Length = 373

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 468 TPVRPFACWFFSGFKRSRSTTFKMFRVLR 382
           TP  P  CW ++  K +R TT ++ ++ +
Sbjct: 129 TPTGPHCCWHYTSTKTTRETTTRLVQMCK 157


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 291 SKDHLPESERRYRNSIHQSKHQK 359
           S+D   + ERR RN IH  K QK
Sbjct: 143 SRDETGDFERRLRNEIHDLKEQK 165


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 289 AQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRS 468
           A++   P +S       +  ++KR+    +  +   H  S  PRS K  + P   R ++S
Sbjct: 245 ARRSRSPQKSRSPQRSRSPRSSKRYRSSRSHRKHRSHSRSRSPRS-KRSRSPRKRRRSKS 303

Query: 469 DSPRK 483
            SPR+
Sbjct: 304 RSPRR 308


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 480 PW*ITPVRPFACWFFSGFKRSRSTTFKMFRVLRLVCEK 367
           PW +T  RP   W     KR      ++F+  +  C+K
Sbjct: 627 PWKMTRARPSLPWISRSIKRQMRKRDRLFKKAKRSCDK 664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,553,331
Number of Sequences: 59808
Number of extensions: 297670
Number of successful extensions: 1458
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)