Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f12
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16680.1 68418.m01951 PHD finger family protein contains Pfam...    32   0.23 
At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    31   0.39 
At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ...    30   0.91 
At1g79200.1 68414.m09234 expressed protein                             28   4.9  
At3g54760.1 68416.m06059 dentin sialophosphoprotein-related cont...    27   6.4  
At1g75200.1 68414.m08736 flavodoxin family protein / radical SAM...    27   6.4  
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot...    27   8.5  

>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 1290

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 310 SRSDDIGTQ-YTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 483
           SR D++  +   NP++      ++E  + K  E SRP   K R+EP+ E S RS   RK
Sbjct: 197 SRKDEVKLESLQNPSSNHDDRVSSEKGNFK--EKSRPGGNKERQEPSVEGSTRSGENRK 253


>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 222 PKQLTVPRVGLSTMNVCKSFKTRVRCDSVFVKKESNLNEQCLRR 91
           P Q T+P +      +C SF  +++   +   KE N   QC+RR
Sbjct: 617 PVQTTLPPLSRRPSRLCASFDDQIKDLEIEASKEQNEINQCMRR 660


>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
           identical to DNA repair and meiosis protein (Mre11)
           GI:5524769 from [Arabidopsis thaliana]
          Length = 720

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 344 IQTPKD-MVFSQTSLKTRNILKVVDLDRLKPEKNQQAN 454
           +  P+D ++FS+ S K R+   + D +RL+PE+  Q N
Sbjct: 388 VANPQDILIFSKASKKGRSEANIDDSERLRPEELNQQN 425


>At1g79200.1 68414.m09234 expressed protein
          Length = 159

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 310 SRSDDIGTQYTNPNTKRH-GFFANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPRKQ 486
           +RS+D  +       KRH G   ++ + S+  +    +S K  K  T ++S + D P+K+
Sbjct: 15  ARSEDSSSSDYEEKVKRHRGTEKDDERRSRRSDKKDKKSHKHHKSSTSKKS-KDDKPKKK 73


>At3g54760.1 68416.m06059 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor (Dentin phosphophoryn DPP,
           Dentin sialoprotein DSP) [Homo sapiens]
          Length = 792

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 376 NESQDSKHFESSR--PRSFKARKEPTGERSNRSDS 474
           NE++D+KH ES++    S K  KE T E + + ++
Sbjct: 193 NETEDAKHSESAQVPEESTKLSKEETDEENQKEEN 227


>At1g75200.1 68414.m08736 flavodoxin family protein / radical SAM
           domain-containing protein contains Pfam profiles
           PF00258: Flavodoxin, PF04055: radical SAM domain protein
          Length = 647

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 20  SRRARVALSILRNS*TFYILYLLRRLKH 103
           S R R+A   L ++ TFY ++  RRLKH
Sbjct: 6   SVRVRLAFVALLSATTFYCIHKYRRLKH 33


>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
           low similarity to kinase [Gallus gallus] GI:1370092;
           contains Pfam profile PF00439: Bromodomain
          Length = 678

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 292 QKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESS 411
           +K T    S DI     NPN   +   A  +  SKHF+ S
Sbjct: 99  RKYTNQPLSGDINNPLFNPNPNPNSISAYGNNSSKHFDDS 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,930,409
Number of Sequences: 28952
Number of extensions: 208137
Number of successful extensions: 672
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)