Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10f11
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 51 5e-07
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 51 5e-07
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 46 2e-05
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 44 4e-05
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515... 43 1e-04
09_06_0359 + 22508900-22509439 37 0.008
02_01_0160 + 1116160-1116678 36 0.019
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 33 0.076
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 32 0.23
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 31 0.40
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 28 3.8
01_06_1547 - 38150814-38151488,38151608-38151666,38151774-381519... 28 3.8
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 50.8 bits (116), Expect = 5e-07
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 282 LFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
L +A AK + +VTHKV FD++I G +V+GLFGKTVP T ENF
Sbjct: 34 LALAQAKKSKADL-TEVTHKVYFDVEIDGKPAGRVVMGLFGKTVPKTAENF 83
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 50.8 bits (116), Expect = 5e-07
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 5/55 (9%)
Frame = +3
Query: 285 FIASAKSD--EIPKGPKVTHKVSFDMKIGDD---NIGTIVIGLFGKTVPXTTENF 434
F++SA +D E+ K+T+KV FD+ IG+ N+G +VIGL+G VP T ENF
Sbjct: 64 FVSSATADPKEVDLQSKITNKVYFDISIGNPVGKNVGRVVIGLYGDDVPQTAENF 118
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = +3
Query: 327 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
KVT KV FD+ I G IV+GLFG TVP T ENF
Sbjct: 37 KVTTKVFFDITINGKPAGRIVMGLFGNTVPKTAENF 72
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +3
Query: 327 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
KV K FD+++G + G IVIGLFG+ VP T +NF
Sbjct: 63 KVNSKCFFDVEVGGEPAGRIVIGLFGEVVPKTVDNF 98
>09_06_0098 +
20850535-20850612,20851258-20851333,20851474-20851521,
20851758-20851781,20851875-20851994,20852235-20852310,
20852385-20852547
Length = 194
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +3
Query: 324 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
P VT++V D++I +IG IVIGL+G VP T NF
Sbjct: 34 PAVTNRVYLDVEIDGQHIGRIVIGLYGDVVPKTVANF 70
>09_06_0359 + 22508900-22509439
Length = 179
Score = 36.7 bits (81), Expect = 0.008
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +3
Query: 339 KVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
KV FD+ IG G +V+ LF TVP T ENF
Sbjct: 7 KVFFDILIGKARAGRVVMELFADTVPKTAENF 38
>02_01_0160 + 1116160-1116678
Length = 172
Score = 35.5 bits (78), Expect = 0.019
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 339 KVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
+V FDM +G G IV+ L+ K VP T ENF
Sbjct: 5 RVFFDMTVGGAPAGRIVMELYAKDVPRTAENF 36
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 33.5 bits (73), Expect = 0.076
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +3
Query: 312 IPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
+PK K H V FD+ IG I LF VP TTENF
Sbjct: 1 MPKAKKNPH-VFFDIAIGGRAAERITFELFADVVPKTTENF 40
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 31.9 bits (69), Expect = 0.23
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 288 IASAKSDEIP-KGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
+ASA + E+ K P+ D+ IG + G IVI L+ VP T ENF
Sbjct: 13 VASAAAAEVEVKNPRCF----MDVSIGGEIEGRIVIELYASVVPRTAENF 58
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 31.1 bits (67), Expect = 0.40
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +3
Query: 315 PKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
P PK V FD+ IG G I + LF VP T ENF
Sbjct: 31 PPNPK-NPVVFFDVTIGSIPAGRIKMELFADIVPKTAENF 69
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 342 VSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
V D+ IGD+ +V LF P T ENF
Sbjct: 9 VFMDVSIGDEPDERMVFELFADVAPRTAENF 39
>01_06_1547 -
38150814-38151488,38151608-38151666,38151774-38151919,
38152078-38152274,38152542-38152920,38153000-38153031
Length = 495
Score = 27.9 bits (59), Expect = 3.8
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = +3
Query: 252 GTLTMALGILLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTEN 431
G + L ILL+I S KSD K V H + IGDD + +I L K V T+ N
Sbjct: 349 GEPQLELLILLYIISLKSDAYDKLASVAHDL-----IGDDEVDSISSVL--KVVRVTSSN 401
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,415,180
Number of Sequences: 37544
Number of extensions: 162528
Number of successful extensions: 261
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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