Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10f11
(437 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase, pu... 56 1e-08
At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase / c... 52 2e-07
At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase, ch... 51 3e-07
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu... 47 6e-06
At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase, pu... 45 2e-05
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc... 43 8e-05
At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase, cy... 37 0.007
At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase cyc... 34 0.036
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 34 0.048
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 34 0.048
At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase / c... 33 0.11
At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase / c... 32 0.15
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu... 31 0.26
At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase, pu... 31 0.45
At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase / c... 31 0.45
At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase / c... 30 0.59
At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase, pu... 29 1.0
At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative (CH... 29 1.4
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)... 27 5.5
At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase cyc... 27 7.3
>At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
(ROC7) similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 204
Score = 55.6 bits (128), Expect = 1e-08
Identities = 32/68 (47%), Positives = 44/68 (64%)
Frame = +3
Query: 231 TKLVLIMGTLTMALGILLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKT 410
+ + L++ +L + LG L I + KS E K ++THKV FD++I G IV+GLFGKT
Sbjct: 3 SSVTLLLWSLLL-LGTLSAIQAKKSKENLK--EITHKVYFDVEIDGKAAGRIVMGLFGKT 59
Query: 411 VPXTTENF 434
VP T ENF
Sbjct: 60 VPKTVENF 67
>At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP5) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443755|gb|AAB71401
Length = 201
Score = 51.6 bits (118), Expect = 2e-07
Identities = 27/49 (55%), Positives = 34/49 (69%)
Frame = +3
Query: 288 IASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
IAS ++ E K +VTHKV FD++I + G +VIGLFGK VP T ENF
Sbjct: 18 IASIQAKEDLK--EVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENF 64
>At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase,
chloroplast / cyclophilin / rotamase / cyclosporin
A-binding protein (ROC4) identical to peptidyl-prolyl
cis-trans isomerase, chloroplast precursor, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34791; identical to
cDNA nuclear-encoded chloroplast stromal cyclophilin
(ROC4) GI:405130
Length = 260
Score = 51.2 bits (117), Expect = 3e-07
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +3
Query: 288 IASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
+A+ + + I KVT+KV FD++IG + G IV+GLFG+ VP T ENF
Sbjct: 79 MAAEEEEVIEPQAKVTNKVYFDVEIGGEVAGRIVMGLFGEVVPKTVENF 127
>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 228
Score = 46.8 bits (106), Expect = 6e-06
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 288 IASAKSDEIPKGPK-VTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
I AK +++ + + VTHKV FD++I G I+IGLFG VP T ENF
Sbjct: 42 ILDAKLNQVGEDLEGVTHKVYFDIQINGSPAGRILIGLFGNIVPKTAENF 91
>At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 224
Score = 45.2 bits (102), Expect = 2e-05
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 234 KLVLIMGTLTMALGILLFIASAKSD-EIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKT 410
+ +L++ LT+ L LF + ++ + ++T++V D+ I +G IVIGL+G
Sbjct: 12 RCLLLLVALTIFLVFALFNTGKDEEKQVIEDHEITNRVFLDVDIDGQRLGRIVIGLYGTV 71
Query: 411 VPXTTENF 434
VP T ENF
Sbjct: 72 VPKTVENF 79
>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 259
Score = 43.2 bits (97), Expect = 8e-05
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = +3
Query: 327 KVTHKVSFDMKIGDDN---IGTIVIGLFGKTVPXTTENF 434
K+THKV FD+ +G+ G IVIGL+G VP T ENF
Sbjct: 87 KITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENF 125
>At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase,
cytosolic / cyclophilin / rotamase (ROC3) identical to
cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
Length = 173
Score = 36.7 bits (81), Expect = 0.007
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 339 KVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
KV FDM +G + G IV+ L+ T P T ENF
Sbjct: 6 KVYFDMTVGGKSAGRIVMELYADTTPETAENF 37
>At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 317
Score = 34.3 bits (75), Expect = 0.036
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Frame = +3
Query: 228 RTKLVLIMGTLTMALGILLFIASAKSDEIPKGPKVTH--------KVSFDMKIGDDNIGT 383
++ L+L++ T T L LL + A++D I P +T+ K D+ I + IG
Sbjct: 50 KSSLLLLLTTQT-TLTPLLDFSKAQADTIAN-PNLTNCENRIPTKKAFIDVSIDGEPIGR 107
Query: 384 IVIGLFGKTVPXTTENF 434
I+IGL+G VP T F
Sbjct: 108 IIIGLYGDDVPAGTARF 124
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 33.9 bits (74), Expect = 0.048
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +3
Query: 327 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
K V D+ IG D + IVI LF VP T ENF
Sbjct: 4 KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENF 39
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 33.9 bits (74), Expect = 0.048
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +3
Query: 327 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
K V D+ IG D + IVI LF VP T ENF
Sbjct: 4 KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENF 39
>At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP1) / rotamase identical to cyclophilin
(CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl
cis-trans isomerase, PPIase (cyclophilin, cyclosporin
A-binding protein) [Catharanthus roseus]
SWISS-PROT:Q39613
Length = 172
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 339 KVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
+V FDM + IG I + LF T P T ENF
Sbjct: 5 RVFFDMSLSGTPIGRIEMELFADTTPNTAENF 36
>At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP2) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443757|gb|AAB71402; similar
to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34790
Length = 174
Score = 32.3 bits (70), Expect = 0.15
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 339 KVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
KV FDM IG G IV+ L+ P T ENF
Sbjct: 6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENF 37
>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase PPIase
(cyclophilin, cyclosporin A-binding protein) [Tomato]
SWISS-PROT:P21568
Length = 232
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 339 KVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
KV FD+ + G IVI LF P T ENF
Sbjct: 5 KVFFDLTVDGKPAGRIVIELFADLTPRTAENF 36
>At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Catharanthus roseus] SWISS-PROT:Q39613
Length = 176
Score = 30.7 bits (66), Expect = 0.45
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 339 KVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
KV FD+ IG G +V+ LF P T NF
Sbjct: 5 KVFFDILIGKMKAGRVVMELFADVTPRTANNF 36
>At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase /
cyclophilin-40 (CYP40) / rotamase identical to
cyclophilin-40 [Arabidopsis thaliana] GI:13442983;
supporting cDNA gi|13442982|gb|AY026065.1|
Length = 361
Score = 30.7 bits (66), Expect = 0.45
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 339 KVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
K D+ IG + G IVI L+ VP T ENF
Sbjct: 5 KCFMDISIGGELEGRIVIELYDDVVPKTAENF 36
>At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase /
cyclophilin / rotamase / cyclosporin A-binding protein
(ROC1) identical to SP|P34790 Peptidyl-prolyl cis-trans
isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin)
(Cyclosporin A-binding protein) {Arabidopsis thaliana}
Length = 172
Score = 30.3 bits (65), Expect = 0.59
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 339 KVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
KV FDM I G IV+ L+ P T ENF
Sbjct: 5 KVYFDMTIDGQPAGRIVMELYTDKTPRTAENF 36
>At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Homo sapiens]
gi|3647230|gb|AAC60793
Length = 199
Score = 29.5 bits (63), Expect = 1.0
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +3
Query: 315 PKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
P PK V FD+ IG G I + LF P T ENF
Sbjct: 26 PPNPK-NPVVFFDVSIGGIPAGRIKMELFADIAPKTAENF 64
>At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative
(CHX25) similar to Na+/H+-exchanging protein slr1595,
Synechocystis sp., PIR:S74951; monovalent cation:proton
antiporter family 2 (CPA2) member, PMID:11500563
Length = 857
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -2
Query: 418 LGTVFPNNP-ITIVPILSSPIFMSKLTL*VTLGPLGISSDLALAMNNKIPKAIVRVPMIK 242
LG V P+ P + + S F+++ + + +G +++ L PK I P+I
Sbjct: 329 LGLVVPHGPPLGSTLAIRSETFVNEFLMPFSFALVGQKTNVNLISKETWPKQIS--PLIY 386
Query: 241 TSLVRFLAIFTKFVSNVYFFKI 176
S+V F+ F FFK+
Sbjct: 387 MSIVGFVTKFVSSTGAALFFKV 408
>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
identical to SP|O24617 DNA mismatch repair protein MSH2
(AtMsh2) {Arabidopsis thaliana}
Length = 937
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 280 KIPKAIVRVPMIKTSLVRFLAIFTKFVSNVYFFKI 176
K+ ++ +R+P IKT++ ++ F +S Y K+
Sbjct: 399 KLYQSTIRLPFIKTAMQQYTGEFASLISERYLKKL 433
>At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 290
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 375 IGTIVIGLFGKTVPXTTENF 434
+G +V+GL+G+ VP T F
Sbjct: 85 LGRVVLGLYGRHVPITVSTF 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,198,826
Number of Sequences: 28952
Number of extensions: 152801
Number of successful extensions: 289
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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