Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f09
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.033
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             31   0.70 
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)                 29   2.1  
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)                 29   3.7  
SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)                   29   3.7  
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   4.9  
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)              28   6.5  
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)                 27   8.6  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +2

Query: 287 MIPHKTERGKNALRRLRTYDGCPPPFD 367
           MIPHKT++G  A+ R++ +DG PPP+D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
 Frame = +2

Query: 50  VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKLKLM 193
           +IDGR  + GRLA  I ++L              G+ VVV+  + I +SG  + NKL   
Sbjct: 20  LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKLYRH 79

Query: 194 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 364
                           H +  ++ILW+ V GM+P K       ++RL  ++    P+
Sbjct: 80  HTGYPGGLKEILAKDLHRKDGTRILWRAVNGMLP-KNNLRPTWMKRLYLFEDEHHPY 135


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 54  SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSTSLATSLG 176
           SM+V +C ++W  + P  F    +L+W+  N   S++ SLG
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWY--NTHPSVSVSLG 303


>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
          Length = 1266

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +2

Query: 419  PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA 592
            PG   C VG+L H   W    + R L   R+  + ++ A   +     + +G+  S++
Sbjct: 866  PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAAAGGRTADQGERSGDSASRS 923


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 453  PMKLDGNTVMLFVSLKTRGRARLL--RELPMKRNLRGSPRMLVRR 581
            P K +GNT    V ++  GR + L  R +P++ N  G P+ LV+R
Sbjct: 1114 PGKAEGNTDKRIVPVENNGRIKQLDKRIIPVENN--GRPKQLVKR 1156


>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
          Length = 622

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 419 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 535
           PG   C VG+L H   W    + R L   R+  + ++ A
Sbjct: 407 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 445


>SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)
          Length = 271

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +2

Query: 410 CLKPGRNYCHVGRL---SHEIGWKYRDVVRKL--EDKRKGKAVKRVAYEKKLKRITKDAG 574
           C KPG+++ HV  +    H    ++ D  R +  +   K  A+K  +Y  KLK + +D G
Sbjct: 106 CYKPGQDFLHVVHVLNRPHIFSSRHHDAYRAIIHDVNEKANALKD-SYISKLKALVQDEG 164


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 270 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTT 127
           H +   AL+W+G R  FTL +   + + LS  + K  + + C   ++T
Sbjct: 530 HEVWYQALRWRGERVYFTLIMPWMSRVPLSQPIPKRSDRVSCGALSST 577


>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
          Length = 225

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 231 RAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTL 121
           R G+   + + ++ ++ LFL   PE++    R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167


>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
          Length = 672

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 8   RFVV--KMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGN 121
           R+V+  + +G +NK ++IDG   L     A   +V+++GN
Sbjct: 601 RYVISGQHSGTTNKRVIIDGNDMLSPHSVATNKRVIIDGN 640


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +2

Query: 113  EGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARG-PFHFRAPSKILWKTVRGM 289
            +G+    V+   IN+      N   ++  LR    V   R     +     + ++T+  +
Sbjct: 837  QGHSTCKVKGLHINLRTGDIVNLTSMLELLRVEGAVAEERHVTLPYTIQRNVHYRTLHTV 896

Query: 290  IPHKTER---GKNALRRLRTYDGCPPP 361
              HKT R    K   R +RTY   PPP
Sbjct: 897  PAHKTFRFVYNKRVRRGMRTYPYAPPP 923


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,060,483
Number of Sequences: 59808
Number of extensions: 397250
Number of successful extensions: 1744
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1742
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)