Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f08
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 32  LTVITMKSALLLLWLYVFHCEGAVIVDSN 118
           LT++ M   L+ LWL     E  +I + N
Sbjct: 253 LTIVLMTMTLMTLWLEPSSTERMIIANLN 281


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 23  DDWLTVITMKSALLLLW 73
           DDW +V+ + S + L+W
Sbjct: 83  DDWTSVMELHSWMTLMW 99


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 340 SRGSNVLQPIQWI 378
           +R SN+ QP QW+
Sbjct: 216 ARRSNLSQPFQWL 228


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 340 SRGSNVLQPIQWI 378
           +R SN+ QP QW+
Sbjct: 306 ARRSNLSQPFQWL 318


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 212 TSYIASSYVKDIEASG 259
           +SY A+SY+ D+   G
Sbjct: 2   SSYFANSYIPDLRNGG 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,860
Number of Sequences: 438
Number of extensions: 4209
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)