Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f06
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    60   3e-10
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   1.4  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   2.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   4.3  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.7  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   7.5  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   7.5  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   7.5  

>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 26/77 (33%), Positives = 46/77 (59%)
 Frame = +3

Query: 318 IKRDPESYKEEFHQQLAHFETTLEIFNLNPTQYSKKLDEQAMFLAQVAQCYFNEMKTFPQ 497
           +K+DP+SY+EEF QQ  H+ET  EIF +NP+    +      F++Q    Y +    FP 
Sbjct: 21  VKKDPKSYREEFLQQWNHYETAREIFLVNPSSDISEFCSLIDFISQTCNYYHDVTADFPS 80

Query: 498 KIVDVLKTHNTTLXNEM 548
           +++++L+ ++T    E+
Sbjct: 81  ELIELLQKNHTIFPFEL 97


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 45  LTCSDNVHN-IHNSE*FTYYNSIHYAQTQIVLCIVSLKNVFERI 173
           LTC   ++  IH S    + NSI + ++Q+ L ++ +++ F  I
Sbjct: 348 LTCGLEIYKAIHTSTVNEFVNSIQFYESQLSLVLMEIESKFSNI 391


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 347 FFVRFWITFYKILQLR*VVRKLIIMPNHFLNIFVQ 243
           FF  F + FY    L  VVR+L     HF NI VQ
Sbjct: 180 FFCTFQLLFYAFRPL--VVRRLPFTLMHFWNIIVQ 212


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 546 FHXVMLCYVFLKHLQFFVEKFSFH*NNT 463
           F  + +CY  L+H++ FVE  + + ++T
Sbjct: 856 FRLICVCYSRLEHIKLFVESSTIYASST 883


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +3

Query: 360 QLAHFETTLEIFNLNPTQYSKKLDEQAMFLAQVAQCYFNEMKTFPQKIVDVLKTHNTTLX 539
           Q++H   T  +FN   +Q   +     +++  V     + + +FP+K++++L+   T L 
Sbjct: 58  QISHL--TGGLFNFLVSQALNEHGLDLLWIIMVVAQTLSALVSFPEKLLNILRNMKTILI 115

Query: 540 N 542
           N
Sbjct: 116 N 116


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 393 FNLNPTQYSKKLDEQAMFLAQVAQCYFNEMKTFPQKIVD 509
           F   P  +S K D+++    +V QC   E KT P  +V+
Sbjct: 91  FGYRPIVFSGKQDQKS----KVIQCLRTERKTIPDDLVE 125


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 360 QLAHFETTLEIFNLNPTQYSKK 425
           QL HF  T +I  LNP + + +
Sbjct: 241 QLVHFSVTAQILGLNPGELASR 262


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 523 CVFKTSTIFCGKVFISLK*HCAT*AKNIACSSSFLLYCVG 404
           C+F +  IF  K+F+  K H +T  K      + LLY  G
Sbjct: 160 CIFVSQNIFGSKIFMEAKSH-STHTKKHYNKLNLLLYSSG 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,515
Number of Sequences: 5004
Number of extensions: 40728
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)