Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f06
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785...    47   9e-06
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911...    30   1.1  
03_06_0568 - 34778408-34778710,34779340-34779411,34779549-347796...    28   4.4  

>04_04_1250 +
           32077590-32078000,32078132-32078308,32078437-32078561,
           32078629-32078761,32078866-32079015,32079105-32079158,
           32079437-32079532,32080021-32080095,32080723-32080824,
           32080903-32081589,32081686-32081817,32081916-32082023,
           32082170-32082319
          Length = 799

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 11/90 (12%)
 Frame = +3

Query: 318 IKRDPESYKEEFHQQLAHFETTLEIFNLNPT-----------QYSKKLDEQAMFLAQVAQ 464
           +KRDPE Y+EE  Q   HFE+++ +F                + +K+L + A+FLA VA 
Sbjct: 35  MKRDPEGYEEELRQLRRHFESSVFLFRQQAALASTSSSGGGGEVAKELGDLALFLAHVAP 94

Query: 465 CYFNEMKTFPQKIVDVLKTHNTTLXNEMRL 554
            Y +++   P +I  +L T+   L + +R+
Sbjct: 95  FYPDDLADLPDQIGGLLDTNARALPSGLRV 124


>10_06_0110 +
           10889414-10889669,10889756-10889806,10890595-10891163,
           10891178-10891660,10891747-10891944,10893300-10893354,
           10893372-10893631
          Length = 623

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 287 SEQPNAVAKSYKT*SRILQRRVSSTTCTF*DHFRNIQLE 403
           SE  +  +K+YK  S +L R     TC+  +H R++ LE
Sbjct: 247 SEMLSLFSKAYKIASHLLSRTADRLTCSAVEHLRHLLLE 285


>03_06_0568 -
           34778408-34778710,34779340-34779411,34779549-34779635,
           34779722-34779880,34780641-34780739,34780823-34780903,
           34781007-34781461,34781550-34781679,34781952-34782743
          Length = 725

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 196 LKQQKSKYLVP-VCSYYCTKIFKKWLGIIINFRTT*RSCKIL*NVIQN 336
           LK ++   LV  + S YC K +  WLG++++   +  S  +L  +++N
Sbjct: 313 LKHERFALLVTCLYSMYCAKNYVGWLGLLLSLNLSFISSDVLVQLLKN 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,028,103
Number of Sequences: 37544
Number of extensions: 201044
Number of successful extensions: 305
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)