Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f06
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3169| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_9346| Best HMM Match : AMMECR1 (HMM E-Value=2.6)                    28   5.9  
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)           27   7.8  
SB_17028| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_3169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1096

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 375 ETTLEIFNLNPTQYSKKLDEQAMFLAQVAQCYFNEMKTFPQKIVD 509
           ++ L + +L  T+Y  K     ++L     C+ ++MK+ PQ I +
Sbjct: 390 DSFLRVTHLTRTRYEDKFVFVKLYLLFHLMCFIHDMKSLPQSITE 434


>SB_9346| Best HMM Match : AMMECR1 (HMM E-Value=2.6)
          Length = 490

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 387 EIFNLNPTQYSKKLDEQAMFLAQVAQCYFNEMKTFPQKIVD 509
           ++ +L  T+Y  K     ++L     C+ ++MK+ PQ I +
Sbjct: 400 QVTHLTRTRYEDKFVFVKLYLLFHLMCFIHDMKSLPQSITE 440


>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
          Length = 2146

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 142  LFH*KTCLKEYF*FVVLCLKQQKSKYLVPVCSYYCTKIFKKWLGIII 282
            +FH   C   +  FV++CL  +  K +   C+Y+  + F  WL II+
Sbjct: 1818 VFH-NVCKVIFMLFVIICLVLEIKKAVGTRCTYF--RKFGNWLEIIL 1861


>SB_17028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/40 (35%), Positives = 27/40 (67%)
 Frame = +1

Query: 250 KIFKKWLGIIINFRTT*RSCKIL*NVIQNLTKKSFINNLH 369
           ++ KKWL +   +RT   SC++  N++ +L  +SF+++LH
Sbjct: 7   EMVKKWLSLAQKWRTEKYSCEMW-NLMDDL--RSFLDDLH 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,179,780
Number of Sequences: 59808
Number of extensions: 276799
Number of successful extensions: 430
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)