Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f06
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.      56   1e-08
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    56   1e-08
U80838-5|AAT48617.1|  317|Caenorhabditis elegans Hypothetical pr...    31   0.56 
Z66565-2|CAA91478.2|  502|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical p...    27   6.9  
AC084159-9|AAK39358.1|  569|Caenorhabditis elegans Hypothetical ...    27   9.1  

>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
 Frame = +3

Query: 318 IKRDPESYKEEFHQQLAHFETTLEIFNLNPTQYSKKLD---EQAMFLAQVAQCYFNEMKT 488
           I++DPESYKEEF +Q  +F  T+++ +L P Q  +++    +  +FL+ +A+ Y  E K 
Sbjct: 54  IRKDPESYKEEFLEQFNYFVQTMKLLHLQPEQSRQEMQSLVDSVLFLSGLAKHYPKESKQ 113

Query: 489 FPQKIVDVLKTHNTTLXNEMRL 554
           F   + ++L+     L  E+R+
Sbjct: 114 FSDSLFELLREQGAGLDPEVRM 135


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
 Frame = +3

Query: 318 IKRDPESYKEEFHQQLAHFETTLEIFNLNPTQYSKKLD---EQAMFLAQVAQCYFNEMKT 488
           I++DPESYKEEF +Q  +F  T+++ +L P Q  +++    +  +FL+ +A+ Y  E K 
Sbjct: 54  IRKDPESYKEEFLEQFNYFVQTMKLLHLQPEQSRQEMQSLVDSVLFLSGLAKHYPKESKQ 113

Query: 489 FPQKIVDVLKTHNTTLXNEMRL 554
           F   + ++L+     L  E+R+
Sbjct: 114 FSDSLFELLREQGAGLDPEVRM 135


>U80838-5|AAT48617.1|  317|Caenorhabditis elegans Hypothetical
           protein F47F6.9 protein.
          Length = 317

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 196 LKQQKSKYLVPVCSYYCTKIFKKW 267
           L  QKSK+LV  CS YC +  ++W
Sbjct: 98  LSMQKSKFLVTACSTYCEEGSEEW 121


>Z66565-2|CAA91478.2|  502|Caenorhabditis elegans Hypothetical
           protein T04F8.2 protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 507 LQFFVEKFSFH*NNTVQLELRT*LAHRVFYYIVWGSS 397
           + FF   FSF   NTVQL L T +A+ +   I  G++
Sbjct: 202 VSFFTFNFSFDEQNTVQLFLLTVVAYAILSIIQSGAN 238


>U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical
           protein ZK1248.10 protein.
          Length = 908

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 411 QYSKKLDEQAMFLAQVAQCYFNEMKTFPQKIVD 509
           Q   K  E  +    +AQ  FNE+  FPQK ++
Sbjct: 859 QCLSKAQEHIIDFKSLAQVAFNELNPFPQKTIE 891


>AC084159-9|AAK39358.1|  569|Caenorhabditis elegans Hypothetical
           protein Y73B3A.4 protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -2

Query: 494 WKSFHF-----IKITLCNLS*EHSLLIEFFTILCGVQVE 393
           WK   F     I  T  NLS EH L  ++FT + G Q++
Sbjct: 434 WKDVKFEIIRVISATGINLSAEHILNTQYFTYVAGAQID 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,899,061
Number of Sequences: 27780
Number of extensions: 232684
Number of successful extensions: 509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)