Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f06
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF052...    42   3e-04
At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profi...    31   0.52 
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    27   6.4  

>At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF05285:
           SDA1 domain; similar to mystery 45A
           (GI:16797816){Drosophila melanogaster}
          Length = 804

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
 Frame = +3

Query: 318 IKRDPESYKEEFHQQLAHFETTLEIFNL-------------NPTQYSKKLDEQAMFLAQV 458
           IKRDPE Y+ E       F+T++++F+              +    SK L ++AMFLA V
Sbjct: 31  IKRDPEGYETELQLIYKQFKTSVDLFHELAALSFSSTGGIGSDPSVSKDLGDRAMFLAHV 90

Query: 459 AQCYFNEMKTFPQKIVDVLKTHNTTLXNEMR 551
              Y  ++  FP ++  +L+T    + + +R
Sbjct: 91  TPFYPKQLAAFPAQLTGLLRTSCLAMPSGLR 121


>At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profile
           PF05285: SDA1
          Length = 698

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 441 MFLAQVAQCYFNEMKTFPQKIVDVLKTHNTTLXNEMR 551
           MFLA V   Y N++  FP ++ D+L+T    + + +R
Sbjct: 1   MFLAHVTPFYPNQLAAFPAQLTDLLRTSCLAMPSGLR 37


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 283  NFRTT*RSCKIL*NVIQNLTKKSFINNLHILR 378
            N R   RSC+ +   I +L  +SF+N L+I R
Sbjct: 1945 NLRDVIRSCQFMQEAIHDLEVESFLNVLYIQR 1976


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,532,626
Number of Sequences: 28952
Number of extensions: 188920
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)