Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f05
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   1.8  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.7  

>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -3

Query: 657 ETSLYLFFSWMKKHKGYDHYLVDYMXYYTSIHININIQL 541
           E+S YL+F++  + K  D+Y +  +    +IH +IN+ +
Sbjct: 501 ESSNYLWFNYSHRSKEIDYYHMSGILMGIAIHNSINLDV 539


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 218 VHYLNNHLPKILGLHINLFSSQARSKTFAIFTKEKCTYFNIPILLIYK 361
           ++Y+   LP +LG+   LFS    S        E+CT   +P LL YK
Sbjct: 810 MNYIMETLPHLLGIKEILFSVLELSSLLWKARTEECTDQYVPQLL-YK 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,084
Number of Sequences: 5004
Number of extensions: 42540
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)