Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f05
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0543 - 9353228-9353233,9353350-9353729,9354828-9354943,935...    31   0.81 
08_01_0883 + 8672020-8672193,8672343-8672458,8672604-8672756,867...    28   5.7  
12_01_0361 - 2743355-2744134                                           28   7.6  

>03_02_0543 -
           9353228-9353233,9353350-9353729,9354828-9354943,
           9355024-9355099,9356865-9357366
          Length = 359

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 654 TSLYLFFSWMKKHKGYDHYLVDYMXYYTSIHININIQ-LIWN*TPKHLTNTITSYHY 487
           T L  F +++   +GY H ++    YY +  +N +++ + W+  P+ L   +T+ H+
Sbjct: 256 TLLMYFANFLASSEGYFHTVICNSKYYQNTTVNNDLRFMAWDNPPRTLPVNLTTEHF 312


>08_01_0883 +
           8672020-8672193,8672343-8672458,8672604-8672756,
           8672868-8673195,8673250-8673480,8673567-8673707,
           8673805-8674002,8674467-8674754
          Length = 542

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 9   NKELRSYLVSHDTTHLFFNLSPIQDDPPYFYPS*FAFDIDEVISLAKKIH 158
           ++E   +L + +  HLF   S IQ  P YFYP  F F   +++   ++ H
Sbjct: 221 DRETTEFLTAKEERHLF---SKIQAKP-YFYPVIFIFRTAQILMKIEEAH 266


>12_01_0361 - 2743355-2744134
          Length = 259

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 472 IS*QYVMIRCNSVC*MFRCSIPYQLNVNINM 564
           IS +Y++I C+    MFRC+I   L  + N+
Sbjct: 187 ISCKYLVISCSGTLLMFRCTISPMLGTSANV 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,216,666
Number of Sequences: 37544
Number of extensions: 213186
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)