Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f05
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    33   0.27 
SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1)             32   0.36 
SB_53410| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_10898| Best HMM Match : Galactosyl_T (HMM E-Value=1.9e-22)          28   7.7  
SB_4268| Best HMM Match : MtrG (HMM E-Value=1.2)                       28   7.7  

>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 42  DTTHLFFNLSPIQDDPPYFYPS*FAFDIDE 131
           DT+HL  N++ I D+PP F PS +   + E
Sbjct: 599 DTSHLLINVNDINDNPPVFSPSAYQSRVKE 628


>SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1)
          Length = 370

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 192 DRSLLV*FRYXXXXXXYQRYSGYILIYFHRKRDPKHSRFLPKKNVPTLIFQ 344
           DR+ L   +Y      YQ+Y  +IL     +   KHS  L  K+VP  + Q
Sbjct: 229 DRAFLYPVKYGPVQKAYQKYPDHILAIMSPEERKKHSEPLDNKDVPCAMCQ 279


>SB_53410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 218 VHYLNNHLPK--ILGLHINLFSSQARSKTFAIFTKEKC 325
           V YLN  +P+  ++G+H +    +A  + +A+ T +KC
Sbjct: 103 VRYLNGGIPQGPVMGVHCDYIIKKANRRLYALRTLKKC 140


>SB_10898| Best HMM Match : Galactosyl_T (HMM E-Value=1.9e-22)
          Length = 301

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 249 YSGYILIYFHRKRDPKHSRFLPKKNVPTLIF-QYC 350
           Y+GY+    +  R+PK+  ++ KK  P   F  YC
Sbjct: 207 YAGYVHFNAYISRNPKNQHYVSKKQFPEKKFPNYC 241


>SB_4268| Best HMM Match : MtrG (HMM E-Value=1.2)
          Length = 542

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/45 (46%), Positives = 22/45 (48%)
 Frame = +2

Query: 239 LPKILGLHINLFSSQARSKTFAIFTKEKCTYFNIPILLIYKIMLV 373
           L K  G H NL SS   S T A  T E   YF + ILL   I LV
Sbjct: 475 LEKHSGFHDNLKSSITISFTLAFQTSEITGYFALGILLGLVIGLV 519


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,568,439
Number of Sequences: 59808
Number of extensions: 285202
Number of successful extensions: 553
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)