Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10f04
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 227 4e-60
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 227 4e-60
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 123 7e-29
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 123 7e-29
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 119 1e-27
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 105 2e-23
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 99 1e-21
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 92 3e-19
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 89 1e-18
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 86 2e-17
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 86 2e-17
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 83 2e-16
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 77 6e-15
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 76 2e-14
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 75 4e-14
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 75 4e-14
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 74 8e-14
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 69 3e-12
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 60 1e-09
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 58 5e-09
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 57 7e-09
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 53 1e-07
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 47 1e-05
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 43 2e-04
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 41 5e-04
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 37 0.008
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 31 0.72
Z78546-6|CAB54307.1| 642|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z78545-5|CAB01764.2| 642|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z78542-2|CAB01744.2| 641|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z36752-5|CAA85328.2| 533|Caenorhabditis elegans Hypothetical pr... 27 8.9
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 227 bits (555), Expect = 4e-60
Identities = 97/118 (82%), Positives = 111/118 (94%)
Frame = +2
Query: 185 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 364
M+TP+RRRLMRDFK+LQEDPP GVSGAPT++NI+ W A+IFGP +TPFEDGTFKL++EFT
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 365 EEYPNKPPTVRFVSKMFHPNVYADGGICLDILXNRWSPTYDVSAILTSIQSLLSDPNP 538
EEYPNKPPTV+F+SKMFHPNVYADG ICLDIL NRWSPTYDV+AILTSIQSLL +PNP
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNP 118
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 227 bits (555), Expect = 4e-60
Identities = 97/118 (82%), Positives = 111/118 (94%)
Frame = +2
Query: 185 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 364
M+TP+RRRLMRDFK+LQEDPP GVSGAPT++NI+ W A+IFGP +TPFEDGTFKL++EFT
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 365 EEYPNKPPTVRFVSKMFHPNVYADGGICLDILXNRWSPTYDVSAILTSIQSLLSDPNP 538
EEYPNKPPTV+F+SKMFHPNVYADG ICLDIL NRWSPTYDV+AILTSIQSLL +PNP
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNP 118
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 123 bits (297), Expect = 7e-29
Identities = 51/114 (44%), Positives = 75/114 (65%)
Frame = +2
Query: 197 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYP 376
A +R+ ++ + L DPP S P +++ W A I GP ++P++ G F LTI F +YP
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61
Query: 377 NKPPTVRFVSKMFHPNVYADGGICLDILXNRWSPTYDVSAILTSIQSLLSDPNP 538
KPP V F ++++HPN+ ++G ICLDIL ++WSP +S +L SI SLL DPNP
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 123 bits (297), Expect = 7e-29
Identities = 51/114 (44%), Positives = 75/114 (65%)
Frame = +2
Query: 197 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYP 376
A +R+ ++ + L DPP S P +++ W A I GP ++P++ G F LTI F +YP
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61
Query: 377 NKPPTVRFVSKMFHPNVYADGGICLDILXNRWSPTYDVSAILTSIQSLLSDPNP 538
KPP V F ++++HPN+ ++G ICLDIL ++WSP +S +L SI SLL DPNP
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 119 bits (287), Expect = 1e-27
Identities = 52/113 (46%), Positives = 76/113 (67%)
Frame = +2
Query: 203 RRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNK 382
RR++++ +RL DP G+S P ++N ++ +I GP D+PF G FKL + EEYP
Sbjct: 7 RRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMA 66
Query: 383 PPTVRFVSKMFHPNVYADGGICLDILXNRWSPTYDVSAILTSIQSLLSDPNPK 541
P VRF++K++HPN+ G ICLDIL ++WSP + +L SIQ+LLS PNP+
Sbjct: 67 APKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPE 119
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 105 bits (252), Expect = 2e-23
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 14/131 (10%)
Frame = +2
Query: 185 MSTPARRRLMRDFKRLQEDPPTGVSGAPTD-NNIMIWNAVIFGPHDTPFEDGTFKLTIEF 361
M+ A +RLM ++K L PP G+ AP D +N W +I GP +T F +G F I F
Sbjct: 1 MAGYALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITF 60
Query: 362 TEEYPNKPPTVRFVSKMFHPNVYADGGICLDIL-------------XNRWSPTYDVSAIL 502
++YP PP +RF +FHPN+YADG +C+ IL RWSP + IL
Sbjct: 61 PQDYPLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKIL 120
Query: 503 TSIQSLLSDPN 535
S+ S+L++PN
Sbjct: 121 LSVVSMLAEPN 131
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 99 bits (238), Expect = 1e-21
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 13/133 (9%)
Frame = +2
Query: 176 KIKMSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTI 355
K S+ A R L + K LQ P G + ++N+ +W I+GP T ++ G FK +I
Sbjct: 4 KASTSSGALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASI 63
Query: 356 EFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDILXN-------------RWSPTYDVSA 496
F YP PP+++F +K++HPNVY +G +C+ IL + RW+PT V
Sbjct: 64 RFPSNYPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRT 123
Query: 497 ILTSIQSLLSDPN 535
IL S+ SLL++PN
Sbjct: 124 ILLSVISLLNEPN 136
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 91.9 bits (218), Expect = 3e-19
Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 14/133 (10%)
Frame = +2
Query: 179 IKMSTPARRRLMRDFKRLQEDPPTGVS-GAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTI 355
++ S+ ++ + D +R+ P G S G DN+I W ++ GP DT +E G FK +
Sbjct: 1 MEQSSLLLKKQLADMRRV---PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAIL 57
Query: 356 EFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDILXN-------------RWSPTYDVSA 496
+F +YP KPP ++F+S+++HPN+ +G +C+ IL + RW P + V
Sbjct: 58 DFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVET 117
Query: 497 ILTSIQSLLSDPN 535
IL S+ S+L+DPN
Sbjct: 118 ILLSVISMLTDPN 130
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 89.4 bits (212), Expect = 1e-18
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Frame = +2
Query: 185 MSTPARRRLMRDFKRL---QEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTI 355
MS A RL R+ K + E TG+ + N+ I GP DTP+ G F L I
Sbjct: 1 MSNIAFNRLQRECKEVVTNSEISETGIMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDI 60
Query: 356 EFTEEYPNKPPTVRFVSKMFHPNVYADGG-ICLDILXNRWSPTYDVSAILTSIQSLLSDP 532
+ ++YP PP V+F +K++HPNV + G ICLDIL ++W+ + + +L SIQ+L+ P
Sbjct: 61 KIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAASLTLRTVLLSIQALMCTP 120
Query: 533 NPK 541
PK
Sbjct: 121 EPK 123
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 85.8 bits (203), Expect = 2e-17
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Frame = +2
Query: 185 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDN-----NIMIWNAVIFGPHDTPFEDGTFKL 349
MS A RL + K ++D P G P N N+ W I G DT +E G +++
Sbjct: 1 MSGIAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRI 60
Query: 350 TIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDILXNR--WSPTYDVSAILTSIQSLL 523
+ F +++P+ PP +F +FHPNVY G +CL +L W P+ + +L IQ LL
Sbjct: 61 RMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLL 120
Query: 524 SDPN 535
+ PN
Sbjct: 121 NHPN 124
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 85.8 bits (203), Expect = 2e-17
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Frame = +2
Query: 185 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDN-----NIMIWNAVIFGPHDTPFEDGTFKL 349
MS A RL + K ++D P G P N N+ W I G DT +E G +++
Sbjct: 1 MSGIAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRI 60
Query: 350 TIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDILXNR--WSPTYDVSAILTSIQSLL 523
+ F +++P+ PP +F +FHPNVY G +CL +L W P+ + +L IQ LL
Sbjct: 61 RMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLL 120
Query: 524 SDPN 535
+ PN
Sbjct: 121 NHPN 124
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 82.6 bits (195), Expect = 2e-16
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Frame = +2
Query: 185 MSTPARRRLMRDFKRLQEDPPTG--VSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIE 358
MS A RRLM++ +L+ + P G V T N++ W + G T + F L
Sbjct: 1 MSDAATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFT 60
Query: 359 FTEEYPNKPPTVRFVSKMF--HPNVYADGGICLDILXNRWSPTYDVSAILTSIQSLLSDP 532
F +YP P V FV + HP++Y++G ICL IL + W+P V ++ SI S+LS
Sbjct: 61 FGPQYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSMLSSS 120
Query: 533 NPK 541
K
Sbjct: 121 KEK 123
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 77.4 bits (182), Expect = 6e-15
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Frame = +2
Query: 185 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 364
+ST A +RL +D++RL ++P + AP + NI+ W +I G TP+E G + + F
Sbjct: 5 VSTVALQRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFP 64
Query: 365 EEYPNKPPTVRFVSKMFHPNVYADGGICL---DILXNRWSPTYDVSAILTSIQSLLSDPN 535
+++P KPP + ++ + + +CL D + W+P + VS I+T + S ++D
Sbjct: 65 KDFPFKPPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQ 122
Query: 536 PKL 544
P L
Sbjct: 123 PTL 125
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 75.8 bits (178), Expect = 2e-14
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 19/138 (13%)
Frame = +2
Query: 182 KMSTPARRRLMRDFKRL---QEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLT 352
KMS A R+ R K + + G+ +NN+M I GP TP+ GTF++
Sbjct: 14 KMSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIK 73
Query: 353 IEFTEEYPNKPPTV---------------RFVSKMFHPNVYADGG-ICLDILXNRWSPTY 484
++ E YP +PP V +FV++++HPN+ + G ICLDIL ++W+ +
Sbjct: 74 VDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASL 133
Query: 485 DVSAILTSIQSLLSDPNP 538
+ +L S+Q++L P P
Sbjct: 134 TLRTVLLSLQAMLCSPEP 151
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 74.5 bits (175), Expect = 4e-14
Identities = 30/78 (38%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +2
Query: 308 GPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV-YADGGICLDILXNRWSPTY 484
GP DT +E+G +++ ++ ++YP K P++ F++K+FHPN+ A G +CLD++ W+ Y
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQAWTALY 100
Query: 485 DVSAIL-TSIQSLLSDPN 535
D++ I T + LL+ PN
Sbjct: 101 DLTNIFDTFLPQLLTYPN 118
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 74.5 bits (175), Expect = 4e-14
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Frame = +2
Query: 188 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTE 367
S+ A RRL +D+ +L +DP G+ P ++NI+ W+ + G DTPF G + + F E
Sbjct: 17 SSSAVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKE 76
Query: 368 EYPNKPPTVRFVSKMFHPNVYADGGICL---DILXNRWSPTYDVSAILTSIQSLLSDPNP 538
+P PP + ++ + + +CL D W+P + VSAIL + S +++ +P
Sbjct: 77 NFPWSPPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFMNENSP 134
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 73.7 bits (173), Expect = 8e-14
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +2
Query: 272 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICL 451
+ N++ W ++ P P+ G FK+ I F +YP KPP V F +K++HPNV +G CL
Sbjct: 29 ETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDYPFKPPKVAFETKIYHPNVDEEGKFCL 87
Query: 452 DIL-XNRWSPTYDVSAILTSIQSLLSDPNP 538
I+ W P ++ ++ SL+++P P
Sbjct: 88 PIVTAENWKPATKTEQVMMALLSLINEPEP 117
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 68.5 bits (160), Expect = 3e-12
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +2
Query: 299 VIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYA-DGGICL-DILXNRW 472
+I G +TP+E G F+L I+ E YP K PTV+F++K++HP+V DG ICL D+ W
Sbjct: 384 IIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGVW 443
Query: 473 SPTYDVSAILTSIQSLLSDPNPK 541
+ + +L IQS +S+ N K
Sbjct: 444 PVSMTIYKVLIVIQSWMSNFNEK 466
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 59.7 bits (138), Expect = 1e-09
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Frame = +2
Query: 272 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSK-----MFHPNVYAD 436
+ + I +I GP DTP+ +G F+ I F YP PP F++ F+PN+Y D
Sbjct: 439 EGRVDIIKVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYND 498
Query: 437 GGICLDIL-------XNRWSPTYDVSAILTSIQSLL 523
G ICL IL +W+P + +L SIQ ++
Sbjct: 499 GKICLSILGTWEGRPEEKWNPYCSLMQVLVSIQEVI 534
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 57.6 bits (133), Expect = 5e-09
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Frame = +2
Query: 311 PHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDILXNR------W 472
P + + G F+ I EY N PP V+ ++K++HPN+ DG ICL IL W
Sbjct: 67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGW 126
Query: 473 SPTYDVSAILTSIQSLLSD 529
PT +++ ++ + SL +D
Sbjct: 127 RPTRNLTDVVHGLVSLFND 145
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 57.2 bits (132), Expect = 7e-09
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Frame = +2
Query: 185 MSTPARRRLMRDFKRLQEDPPTG-VS-GAPTDNNIMI--WNAVIFGPHDTPFEDGTFKLT 352
+ P RL+ + + Q+ G +S G D+++ + W A I GP TP+E + L
Sbjct: 2 VDVPRNFRLLEELEEGQKGKGDGNISWGLEDDSDMTLTRWTASIIGPPRTPYESRIYNLQ 61
Query: 353 IEFTEEYPNKPPTVRFVSKMFHPNVYADGGIC----LDILXNRWSPTYDVSAILTSIQS- 517
I+ YP +PPTVRF +K+ V G+ L L N WS +Y + +L I+
Sbjct: 62 IQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRNLTTLRN-WSNSYMIKTVLEDIRKN 120
Query: 518 -LLSDPNPKL 544
+++ N KL
Sbjct: 121 MMMAKENLKL 130
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 290 WNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDIL-XN 466
W + GP +P+E G +++++ F ++P PP F + + HPNV G I L +L
Sbjct: 71 WICTVPGPRGSPWEGGEYEVSVNF-HKWPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQE 129
Query: 467 RWSPTYDVSAILTSIQSLLSDPN 535
WS + +L I +LL+ P+
Sbjct: 130 HWSSETSLKKLLREISNLLATPD 152
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 46.8 bits (106), Expect = 1e-05
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Frame = +2
Query: 203 RRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNK 382
RRLM++ L++ P P ++N+ W+ I G T FE G + I F +YP K
Sbjct: 13 RRLMKEAMELRQ-PTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYPMK 71
Query: 383 PPTVRFVSKMFHPNVYADGGICLDIL---XNRWSPTYDV-SAILTSIQSLLSDPNPKL 544
PP + ++ + + +CL I W P++ + +A+L I L S P L
Sbjct: 72 PPNLILLTP--NGRFELNKKVCLSISGYHPETWLPSWSIRTALLALIGFLPSTPGGAL 127
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +2
Query: 326 FEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV-YADGGICLD-ILXNRWSPTYDVSAI 499
+++ F LT++ EYP KPP ++F ++HPNV +C +L W P + +
Sbjct: 57 YKNMIFTLTLDVNVEYPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDV 116
Query: 500 LTSIQSLLSDPN 535
L ++ LL++P+
Sbjct: 117 LLNLIVLLNEPD 128
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 197 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTI 355
A +R+ ++ L DPP S +++ W A I GP ++P++ G F LTI
Sbjct: 2 ALKRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPESPYQGGIFFLTI 54
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 41.1 bits (92), Expect = 5e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 302 IFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRF 400
I GP DTP+E G F++ + F + YPN P ++F
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKF 67
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 37.1 bits (82), Expect = 0.008
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +2
Query: 173 LKIKMSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLT 352
LKI + + L +F + P G+ +P+ NN +W VIF F G F+
Sbjct: 12 LKIPGNILKEQALAAEFVEVCRAPIDGIFVSPSANNKFLWFGVIF-VRKGIFGGGIFRFN 70
Query: 353 IEFTEEYPNKPPTVRFV---SKMFHP 421
I E+P+ R + S +FHP
Sbjct: 71 IHIPLEFPDASDLPRVIFEQSNLFHP 96
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 30.7 bits (66), Expect = 0.72
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = +2
Query: 188 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTE 367
S+ R R K ++ P+G G NN+ W +V D F DG + I
Sbjct: 64 SSENRDGTKRVVKHIRSLEPSGYEGGNEGNNLEAWQSV-QSNQDGVFPDGYDGINIIRNF 122
Query: 368 EYPNKPPTVRFVSKMFHP 421
YP PP+ R + +M P
Sbjct: 123 MYP-PPPSRRHIPEMKPP 139
>Z78546-6|CAB54307.1| 642|Caenorhabditis elegans Hypothetical
protein M03B6.3 protein.
Length = 642
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 293 NAVIFG-PHDTPFEDGTFKLTIEFTEEYPNKPPTVR 397
N FG P D P +GT K +F + + ++PPT +
Sbjct: 90 NKTDFGTPLDLPGMNGTSKAAFKFLDAFTSQPPTTK 125
>Z78545-5|CAB01764.2| 642|Caenorhabditis elegans Hypothetical
protein M03B6.3 protein.
Length = 642
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 293 NAVIFG-PHDTPFEDGTFKLTIEFTEEYPNKPPTVR 397
N FG P D P +GT K +F + + ++PPT +
Sbjct: 90 NKTDFGTPLDLPGMNGTSKAAFKFLDAFTSQPPTTK 125
>Z78542-2|CAB01744.2| 641|Caenorhabditis elegans Hypothetical
protein F20D1.2 protein.
Length = 641
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 341 MFHLQMEYHEGQISQHSRS*YC 276
+F L ++YH+ QIS H S +C
Sbjct: 154 LFRLLLQYHDPQISNHLESLHC 175
>Z36752-5|CAA85328.2| 533|Caenorhabditis elegans Hypothetical
protein F35H8.6 protein.
Length = 533
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 223 KIPHQASSCWS*HFDF-QYLSYNTMRFFYF*VGVTLTPLYKNYVLRT 86
++PH S + H +F QY + + FF+F + TL+ +Y Y +RT
Sbjct: 465 EVPHARSG--ADHLNFLQYFLVDVIAFFFFVIFCTLSIIY--YTIRT 507
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,731,548
Number of Sequences: 27780
Number of extensions: 303677
Number of successful extensions: 716
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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