Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f04
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   3.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.2  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 289 DHNIVISWSS*HTCRWIL 236
           DHN  I WS  H C  +L
Sbjct: 33  DHNGSIYWSMYHLCTVVL 50


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 399 NRTVGGLFGYSSVNSIVS 346
           NR +GG+ GY+ + +++S
Sbjct: 415 NRFLGGIGGYNGLPTVMS 432


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 382 TPNSTICIKNVSSKCLRR 435
           +PNSTI +     KC RR
Sbjct: 96  SPNSTIAVCVCMRKCPRR 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,933
Number of Sequences: 438
Number of extensions: 3382
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)