Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10f01
(646 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associa... 138 1e-31
UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole... 132 7e-30
UniRef50_Q9FI15 Cluster: Similarity to small nuclear ribonucleop... 108 1e-22
UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babe... 108 1e-22
UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nucl... 101 1e-20
UniRef50_Q55A45 Cluster: Putative small nuclear ribonucleopartic... 101 1e-20
UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B, puta... 98 2e-19
UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1; ... 95 1e-18
UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2; Plasm... 93 4e-18
UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nucl... 93 7e-18
UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3; Plasm... 89 8e-17
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 87 3e-16
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 81 3e-14
UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;... 77 3e-13
UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB, pu... 77 5e-13
UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 73 5e-12
UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core bi... 72 1e-11
UniRef50_A3LXX4 Cluster: Predicted protein; n=3; Saccharomycetac... 71 2e-11
UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associa... 68 2e-10
UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein ... 67 3e-10
UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1; ... 67 4e-10
UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 66 7e-10
UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein... 62 8e-09
UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ... 56 1e-06
UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Re... 55 1e-06
UniRef50_A5E144 Cluster: Putative uncharacterized protein; n=1; ... 55 1e-06
UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-... 51 3e-05
UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA... 50 5e-05
UniRef50_A2BIG9 Cluster: LSM domain-containing protein 1; n=14; ... 50 5e-05
UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA... 50 6e-05
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 49 1e-04
UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11; Saccharomyc... 48 1e-04
UniRef50_Q9BRA0 Cluster: LSM domain-containing protein 1; n=12; ... 48 3e-04
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 47 4e-04
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 46 6e-04
UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella... 45 0.001
UniRef50_Q4V620 Cluster: IP06106p; n=3; Sophophora|Rep: IP06106p... 45 0.001
UniRef50_Q5K8A9 Cluster: RNA cap binding protein, putative; n=1;... 45 0.002
UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm... 44 0.002
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 44 0.002
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 44 0.003
UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicin... 44 0.004
UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein, pu... 43 0.007
UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p... 42 0.010
UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1; ... 42 0.010
UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1... 42 0.010
UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm... 42 0.010
UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm... 42 0.013
UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative; ... 42 0.017
UniRef50_A6RWH0 Cluster: Predicted protein; n=10; Pezizomycotina... 42 0.017
UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2; ... 41 0.022
UniRef50_A2F7C1 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 41 0.022
UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm... 41 0.022
UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putati... 41 0.029
UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 41 0.029
UniRef50_Q0UHH8 Cluster: Predicted protein; n=2; Pezizomycotina|... 41 0.029
UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protei... 40 0.039
UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm... 40 0.039
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 40 0.051
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 40 0.051
UniRef50_Q6NNL2 Cluster: At4g18372; n=4; Magnoliophyta|Rep: At4g... 39 0.090
UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella... 39 0.090
UniRef50_A7P4Z8 Cluster: Chromosome chr4 scaffold_6, whole genom... 39 0.090
UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1; Plasm... 39 0.090
UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE, pu... 39 0.090
UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 39 0.090
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 39 0.090
UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1; ... 39 0.12
UniRef50_Q4UC24 Cluster: U6 snRNA-associated Sm-like potein, put... 39 0.12
UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.12
UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 38 0.16
UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2; C... 38 0.16
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 38 0.16
UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=... 38 0.21
UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;... 38 0.21
UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 38 0.21
UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1; Filobas... 38 0.21
UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotei... 38 0.27
UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, wh... 38 0.27
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 38 0.27
UniRef50_Q54HH8 Cluster: Putative small nuclear ribonucleopartic... 37 0.36
UniRef50_Q6BIX4 Cluster: Similar to CA2640|IPF2930 Candida albic... 37 0.36
UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 37 0.36
UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 0.48
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1... 37 0.48
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.63
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 36 0.63
UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2; ... 36 0.63
UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 36 0.84
UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1; ... 36 0.84
UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;... 36 0.84
UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51... 36 0.84
UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like pr... 36 0.84
UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, wh... 36 1.1
UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear ri... 36 1.1
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep... 35 1.5
UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole gen... 35 1.5
UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus lu... 35 1.5
UniRef50_Q7R4T3 Cluster: GLP_440_43387_42998; n=1; Giardia lambl... 35 1.5
UniRef50_Q6QA14 Cluster: Lsm8p; n=6; Trypanosomatidae|Rep: Lsm8p... 35 1.5
UniRef50_Q2HFG8 Cluster: Putative uncharacterized protein; n=1; ... 35 1.5
UniRef50_Q1DNR5 Cluster: Putative uncharacterized protein; n=1; ... 35 1.5
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 35 1.5
UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 35 1.5
UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homol... 35 1.9
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 35 1.9
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 35 1.9
UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18... 35 1.9
UniRef50_Q4Q3L7 Cluster: Small nuclear ribonucleoprotein SmD2; n... 34 2.6
UniRef50_Q7SG45 Cluster: Predicted protein; n=1; Neurospora cras... 34 2.6
UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_A4RG53 Cluster: Predicted protein; n=1; Magnaporthe gri... 34 2.6
UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 34 2.6
UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;... 34 2.6
UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putati... 34 3.4
UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces cere... 34 3.4
UniRef50_O42978 Cluster: U6 snRNP-associated protein Lsm5; n=4; ... 34 3.4
UniRef50_A4RDX2 Cluster: Predicted protein; n=1; Magnaporthe gri... 34 3.4
UniRef50_A2QP90 Cluster: Contig An07c0280, complete genome; n=3;... 34 3.4
UniRef50_A2Q9H8 Cluster: Contig An01c0290, complete genome; n=2;... 34 3.4
UniRef50_P62316 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 34 3.4
UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm... 34 3.4
UniRef50_A7Q0D5 Cluster: Chromosome chr7 scaffold_42, whole geno... 33 4.5
UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, wh... 33 4.5
UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotei... 33 4.5
UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;... 33 5.9
UniRef50_Q0M0F8 Cluster: YhhN-like; n=1; Caulobacter sp. K31|Rep... 33 5.9
UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2; ... 33 5.9
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ... 33 5.9
UniRef50_Q4N780 Cluster: Putative uncharacterized protein; n=2; ... 33 5.9
UniRef50_Q2UPT0 Cluster: Predicted protein; n=2; Aspergillus|Rep... 33 5.9
UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is associ... 33 5.9
UniRef50_Q9VI10 Cluster: Probable small nuclear ribonucleoprotei... 33 5.9
UniRef50_Q01DG8 Cluster: Small nuclear ribonucleoprotein D2-like... 33 7.8
>UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associated
protein N; n=94; Eukaryota|Rep: Small nuclear
ribonucleoprotein-associated protein N - Homo sapiens
(Human)
Length = 240
Score = 138 bits (334), Expect = 1e-31
Identities = 75/152 (49%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7390,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 268
Score = 132 bits (319), Expect = 7e-30
Identities = 60/81 (74%), Positives = 71/81 (87%)
Frame = +3
Query: 108 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR 287
T+GK++KM QHI++R+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK +R
Sbjct: 9 TVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPER 68
Query: 288 EEKRTLGFVLLRGENIVSLTI 350
EEKR LG VLLRGEN+VS+T+
Sbjct: 69 EEKRVLGLVLLRGENLVSMTV 89
>UniRef50_Q9FI15 Cluster: Similarity to small nuclear
ribonucleoprotein; n=6; Viridiplantae|Rep: Similarity to
small nuclear ribonucleoprotein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 254
Score = 108 bits (260), Expect = 1e-22
Identities = 49/85 (57%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI---KSKNSK 275
M++ K++KM Q INYR+RV +QD R IG F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 276 TADREEKRTLGFVLLRGENIVSLTI 350
+REE+RTLG VLLRGE ++S+T+
Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTV 85
>UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babesia
bovis|Rep: Sm domain containing protein - Babesia bovis
Length = 159
Score = 108 bits (260), Expect = 1e-22
Identities = 50/78 (64%), Positives = 58/78 (74%)
Frame = +3
Query: 114 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 293
GKN +MQQ + YRVRV ++D R F+GTF AFDKHMNL+L DCEEFR K K E
Sbjct: 3 GKNTRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVEL 62
Query: 294 KRTLGFVLLRGENIVSLT 347
KRTLGF++LRGENIVS T
Sbjct: 63 KRTLGFIMLRGENIVSFT 80
>UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein; n=1; Rattus
norvegicus|Rep: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein - Rattus
norvegicus
Length = 195
Score = 101 bits (242), Expect = 1e-20
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR R LQD R FIG FKAFDKHMN IL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRTRCFLQDGRIFIGIFKAFDKHMNSILCDCDEFRKIKPKNEKQTE 60
Query: 285 REEKRTLG 308
EEKR G
Sbjct: 61 CEEKRVFG 68
>UniRef50_Q55A45 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=2;
Dictyostelium discoideum|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 274
Score = 101 bits (242), Expect = 1e-20
Identities = 44/78 (56%), Positives = 62/78 (79%)
Frame = +3
Query: 117 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 296
K++KM Q+INYR+RV +QD R +G F AFDKHMN+++ D EEFR+I+ K + DREEK
Sbjct: 6 KSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKE--DREEK 63
Query: 297 RTLGFVLLRGENIVSLTI 350
RTLG +L+RGE +VS+++
Sbjct: 64 RTLGMILIRGETVVSMSV 81
>UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B,
putative; n=3; Eukaryota|Rep: Small nuclear
ribonucleoprotein B, putative - Theileria parva
Length = 155
Score = 97.9 bits (233), Expect = 2e-19
Identities = 47/78 (60%), Positives = 56/78 (71%)
Frame = +3
Query: 114 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 293
GKN +MQ + Y VRV L+D+R F+GT A+DK+MNL+L DCEEFR K+ E
Sbjct: 3 GKNTRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRT--EV 60
Query: 294 KRTLGFVLLRGENIVSLT 347
KRTLGFVLLRGENIVS T
Sbjct: 61 KRTLGFVLLRGENIVSFT 78
>UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1;
Homo sapiens|Rep: Putative uncharacterized protein -
Homo sapiens (Human)
Length = 208
Score = 95.5 bits (227), Expect = 1e-18
Identities = 43/68 (63%), Positives = 54/68 (79%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 285 REEKRTLG 308
REEKR G
Sbjct: 101 REEKRVSG 108
>UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2;
Plasmodium|Rep: Ribonucleoprotein, putative - Plasmodium
falciparum (isolate 3D7)
Length = 201
Score = 93.5 bits (222), Expect = 4e-18
Identities = 40/79 (50%), Positives = 61/79 (77%)
Frame = +3
Query: 111 IGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 290
+GKN++++ + YRVRV + D+R F+GTF ++D+HMN++L D EEFRK+KS+ + +E
Sbjct: 1 MGKNSRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSL--KE 58
Query: 291 EKRTLGFVLLRGENIVSLT 347
KR +G +L+RGENIVS T
Sbjct: 59 IKRVVGLILIRGENIVSFT 77
>UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N - Ornithorhynchus
anatinus
Length = 154
Score = 92.7 bits (220), Expect = 7e-18
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIK 260
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK
Sbjct: 103 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIK 154
>UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3;
Plasmodium (Vinckeia)|Rep: Ribonucleoprotein, putative -
Plasmodium berghei
Length = 194
Score = 89.0 bits (211), Expect = 8e-17
Identities = 37/79 (46%), Positives = 60/79 (75%)
Frame = +3
Query: 111 IGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 290
+GKN +++ + YRVRV + D+R ++GTF ++D+HMN++L D EEFR++K+K + +E
Sbjct: 1 MGKNYRLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKENNF--KE 58
Query: 291 EKRTLGFVLLRGENIVSLT 347
KR +G +L+RG+NIVS T
Sbjct: 59 IKRVVGLILIRGDNIVSFT 77
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 87.0 bits (206), Expect = 3e-16
Identities = 37/71 (52%), Positives = 53/71 (74%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
MQ++INYR+RV +QD R +G AFD+HMNL+L DC+E+R++K +E KR+LG
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEE---PKELKRSLG 57
Query: 309 FVLLRGENIVS 341
++LRGENIV+
Sbjct: 58 LIMLRGENIVT 68
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 80.6 bits (190), Expect = 3e-14
Identities = 37/79 (46%), Positives = 55/79 (69%)
Frame = +3
Query: 111 IGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 290
+ + +K Q I+YRVR+ L D R +GTF AFDKH+N+IL +CEE+R + + E
Sbjct: 1 MSQKSKFFQWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYR---IRKQGIHEIE 57
Query: 291 EKRTLGFVLLRGENIVSLT 347
KRTLG +++RG+NI+SL+
Sbjct: 58 TKRTLGMIIVRGDNIISLS 76
>UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;
Fungi/Metazoa group|Rep: Uncharacterized protein
C26A3.08 - Schizosaccharomyces pombe (Fission yeast)
Length = 147
Score = 77.4 bits (182), Expect = 3e-13
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN-SKTADREEKRT 302
KM +N+ + V +D RTF+G AFD MNL+L DC+E+R IK +N + EEKR
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRM 64
Query: 303 LGFVLLRGENIVSLTI 350
LG V+LRGE IVSL++
Sbjct: 65 LGLVILRGEFIVSLSV 80
>UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB,
putative; n=2; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmB, putative - Aspergillus fumigatus
(Sartorya fumigata)
Length = 357
Score = 76.6 bits (180), Expect = 5e-13
Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 8/78 (10%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSK--------NSKTADREEK 296
INYR+R+ L D R G AFDKHMNL+L D EEFR++K K N+ + EEK
Sbjct: 131 INYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPSNAPLVEAEEK 190
Query: 297 RTLGFVLLRGENIVSLTI 350
RTLG ++RG ++VS ++
Sbjct: 191 RTLGLTIVRGTHVVSCSV 208
>UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 158
Score = 73.3 bits (172), Expect = 5e-12
Identities = 31/82 (37%), Positives = 53/82 (64%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
M + +K+ + IN RV+V++ D R F+G AFD H N++L DCEE+R++ + +
Sbjct: 1 MQAPRGSKLSKFINSRVKVVISDHRYFVGQMLAFDTHSNIVLKDCEEYRRLNRRKAGEL- 59
Query: 285 REEKRTLGFVLLRGENIVSLTI 350
+E KR +G ++LRGE ++ + I
Sbjct: 60 QEAKRNIGLMILRGETVLHIDI 81
>UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core
binding protein B/B'; n=1; Candida albicans|Rep:
Potential spliceosomal snRNA Sm core binding protein
B/B' - Candida albicans (Yeast)
Length = 110
Score = 71.7 bits (168), Expect = 1e-11
Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 7/81 (8%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK----TADRE-- 290
M IN+R+++I D+RT++GT +FDKHMNL+L D EE R K S+ T + E
Sbjct: 1 MSDLINFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQLKKHTPNVELV 60
Query: 291 -EKRTLGFVLLRGENIVSLTI 350
+KR LG ++LRG+ +VS TI
Sbjct: 61 YDKRNLGLIILRGDQVVSFTI 81
>UniRef50_A3LXX4 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 142
Score = 71.3 bits (167), Expect = 2e-11
Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 10/92 (10%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKS-----KN 269
+ I K KM I+YR+++ D+R FIG+ AFDKH+NL+L D EE R K K
Sbjct: 4 LPITKTTKMSDLIHYRLKISTIDNRFFIGSLLAFDKHLNLVLSDTEETRITKKSIVSMKK 63
Query: 270 SKTADRE-----EKRTLGFVLLRGENIVSLTI 350
S +D + +KR+LG ++LRGE IVSL+I
Sbjct: 64 SAGSDGKHDPTFDKRSLGLIILRGEQIVSLSI 95
>UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associated
protein B; n=4; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein-associated protein B - Saccharomyces
cerevisiae (Baker's yeast)
Length = 196
Score = 68.1 bits (159), Expect = 2e-10
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 12/95 (12%)
Frame = +3
Query: 102 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 281
K+ + ++++ I+Y++RV+ QD R +IG AFDKHMNL+L +C E R K++ K
Sbjct: 3 KIQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLR 62
Query: 282 DRE------------EKRTLGFVLLRGENIVSLTI 350
R+ EKR LG +LRGE I+S +
Sbjct: 63 PRKDSKDGTTLNIKVEKRVLGLTILRGEQILSTVV 97
>UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein F;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein F - Entamoeba histolytica HM-1:IMSS
Length = 205
Score = 67.3 bits (157), Expect = 3e-10
Identities = 31/78 (39%), Positives = 54/78 (69%)
Frame = +3
Query: 117 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 296
K++K+ ++INY ++V + R F+G F AFDK+MN+IL + E R + +K ++ ++E +
Sbjct: 4 KSSKISKYINYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTVINKKTR-EEKEIE 62
Query: 297 RTLGFVLLRGENIVSLTI 350
R+LG +LLRG+ I T+
Sbjct: 63 RSLGMMLLRGDCIQGYTV 80
>UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 232
Score = 66.9 bits (156), Expect = 4e-10
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +3
Query: 117 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 275
K KM INYR+R+ L DSR +G AFD HMNL+L D +E+RK+KS+ +K
Sbjct: 7 KGGKMMSLINYRLRITLNDSRQIVGQLLAFDAHMNLVLADSQEYRKVKSRKAK 59
>UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome B of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 191
Score = 66.1 bits (154), Expect = 7e-10
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 9/87 (10%)
Frame = +3
Query: 117 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK--------IKSKNS 272
K K+ I+YR+RV D R +IG AFD +MNL++GDC E R +KS +
Sbjct: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGN 68
Query: 273 KTAD-REEKRTLGFVLLRGENIVSLTI 350
+++ + E+RT G ++LRGE+++S ++
Sbjct: 69 LSSNVQVERRTFGLIILRGEHVLSTSV 95
>UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein,
putative; n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein protein, putative - Trypanosoma cruzi
Length = 114
Score = 62.5 bits (145), Expect = 8e-09
Identities = 29/74 (39%), Positives = 47/74 (63%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
M +IN +R++L D R G +D+HMN++LGD E R+ ++K K A +R+LG
Sbjct: 6 MLHNINRTLRIVLIDGRELTGKLLVYDRHMNVVLGDATESRE-ETKKMKEAGISPQRSLG 64
Query: 309 FVLLRGENIVSLTI 350
VLLRG +++S+ +
Sbjct: 65 LVLLRGVHVISVNV 78
>UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 86
Score = 55.6 bits (128), Expect = 1e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
+++ +N +RV + D RT IG+F DK N+ILG C+EF + S D+E+ R L
Sbjct: 3 ELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEFSLLLSLG---VDKEDPRIL 59
Query: 306 GFVLLRGENIVSLTI 350
G ++ G +I S+ +
Sbjct: 60 GLAMVPGRHIQSIEV 74
>UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Rep:
AER432Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 158
Score = 55.2 bits (127), Expect = 1e-06
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +3
Query: 108 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 251
T+ + ++ I+Y++RV+ QD R ++GT AFD HMNL+L DC E R
Sbjct: 4 TVSHRSTLKDLIDYKLRVLSQDGRVYVGTLLAFDAHMNLVLADCVEER 51
>UniRef50_A5E144 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 152
Score = 55.2 bits (127), Expect = 1e-06
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 296
M INYR+R++ D+RT++G+ +FDKH+NL+L D EE R K + ++ +K
Sbjct: 1 MSDLINYRLRILTVDNRTYVGSLLSFDKHLNLVLSDTEESRITKKSWIEMKNKSQK 56
>UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-PA
- Drosophila melanogaster (Fruit fly)
Length = 95
Score = 50.8 bits (116), Expect = 3e-05
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
++ +IN+ V +I D R FIGT K FD+ +N+I+ +C E + T E+ LG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHE------RVFSTTSGIEQIVLG 57
Query: 309 FVLLRGENI 335
++RG+NI
Sbjct: 58 LHIIRGDNI 66
>UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG31950-PA
- Tribolium castaneum
Length = 134
Score = 50.0 bits (114), Expect = 5e-05
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
K++ +N +R+ + D R +G F D+ N+ILG C E+ + T EE R L
Sbjct: 38 KLRSWLNKSLRIQMFDGRVLVGVFLCTDRDANVILGSCTEYLPAEDNGDGTI--EEPRML 95
Query: 306 GFVLLRGENIVSLTI 350
G V++ G++I S+ I
Sbjct: 96 GLVMVPGKHIQSVAI 110
>UniRef50_A2BIG9 Cluster: LSM domain-containing protein 1; n=14;
Euteleostomi|Rep: LSM domain-containing protein 1 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 109
Score = 50.0 bits (114), Expect = 5e-05
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
K++ +N +R+ + D RT +G F D+ N+ILG +EF +KS +S + E R L
Sbjct: 27 KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEF--LKSTDS--LSQGEPRVL 82
Query: 306 GFVLLRGENIVSLTI 350
G ++ G ++VS+ +
Sbjct: 83 GLAMIPGHHVVSIEV 97
>UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG31950-PA - Apis mellifera
Length = 103
Score = 49.6 bits (113), Expect = 6e-05
Identities = 26/73 (35%), Positives = 40/73 (54%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
K++ +N +R+ + D R IG F D+ N+ILG C EF + D E RTL
Sbjct: 35 KLRGWLNRNLRIKMTDGRVLIGAFLCTDRDANVILGSCSEF--------LSEDHTEARTL 86
Query: 306 GFVLLRGENIVSL 344
G V++ G +IV++
Sbjct: 87 GLVMIPGRHIVTI 99
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 48.8 bits (111), Expect = 1e-04
Identities = 29/69 (42%), Positives = 38/69 (55%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
+N V + L+ R F G K+FD HMNL+L D EE D E R LG VL+
Sbjct: 22 LNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE----------DGEVTRRLGTVLI 71
Query: 321 RGENIVSLT 347
RG+NIV ++
Sbjct: 72 RGDNIVYIS 80
>UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11;
Saccharomycetales|Rep: Sm-like protein LSm1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 172
Score = 48.4 bits (110), Expect = 1e-04
Identities = 28/68 (41%), Positives = 42/68 (61%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
++ ++ V+L+D R G + FD++ NLIL DC E R S+ +K A EE R G ++
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVE-RIYFSEENKYA--EEDR--GIFMI 104
Query: 321 RGENIVSL 344
RGEN+V L
Sbjct: 105 RGENVVML 112
>UniRef50_Q9BRA0 Cluster: LSM domain-containing protein 1; n=12;
Theria|Rep: LSM domain-containing protein 1 - Homo
sapiens (Human)
Length = 125
Score = 47.6 bits (108), Expect = 3e-04
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 306 GFVLLRGENIVSLTI 350
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 46.8 bits (106), Expect = 4e-04
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +3
Query: 84 LPNHSDKMTIGKN-NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIK 260
L N + + I + + ++ ++N V +I D R F+GT K FD+ +N+IL + E ++
Sbjct: 55 LSNRNQRYDIHETMSGLESYVNTTVSIITADGRNFVGTLKGFDQTINIILDESHE--RVY 112
Query: 261 SKNSKTADREEKRTLGFVLLRGENI 335
S N+ E+ LG ++RG+N+
Sbjct: 113 SMNAGI----EQVVLGLHIIRGDNV 133
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 46.4 bits (105), Expect = 6e-04
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+++ +N RV ++L+D+R GT +D +MN++L D +E NS+ R+ LG
Sbjct: 8 LEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDE-------NSENVSRK----LG 56
Query: 309 FVLLRGENIVSL 344
V++RG N+V +
Sbjct: 57 TVVIRGSNVVRI 68
>UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1;
uncultured crenarchaeote|Rep: Putative uncharacterized
protein - uncultured crenarchaeote
Length = 89
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/78 (26%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEK 296
+Q+ + V V L+ R+ G K FDK MN+++ + E + +S N+ +++ E++
Sbjct: 11 LQESVGKIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNNDNSEKGKGQEQE 70
Query: 297 RTLGFVLLRGENIVSLTI 350
+G L+RG+N++++ +
Sbjct: 71 TQVGDALIRGDNVITIAV 88
>UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 82
Score = 45.2 bits (102), Expect = 0.001
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFK------AFDKHMNLILGDCEEFRKIKSKNSKTADRE 290
++++IN R+ ++ ++ G +K A+DK MNL+L D EE+ N K +E
Sbjct: 8 LKKYINKRINIVTKNYDRINGRYKKFYRLLAYDKFMNLVLSDVEEY-----INDKKDSQE 62
Query: 291 EKRTLGFVLLRGENIVSL 344
+R LG ++LRG I+ L
Sbjct: 63 IRRVLGLMVLRGSEIIYL 80
>UniRef50_Q4V620 Cluster: IP06106p; n=3; Sophophora|Rep: IP06106p -
Drosophila melanogaster (Fruit fly)
Length = 121
Score = 45.2 bits (102), Expect = 0.001
Identities = 25/82 (30%), Positives = 46/82 (56%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
+T G+ K+Q+ + +R+++ D R +G F D+ N++L C E+ +
Sbjct: 38 LTPGRR-KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEY---------LVE 87
Query: 285 REEKRTLGFVLLRGENIVSLTI 350
+E R LG V++ G++IVSL+I
Sbjct: 88 GQEPRLLGNVMVPGQHIVSLSI 109
>UniRef50_Q5K8A9 Cluster: RNA cap binding protein, putative; n=1;
Filobasidiella neoformans|Rep: RNA cap binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 135
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/68 (36%), Positives = 42/68 (61%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
++ +V VIL+D R IG F+++D+ N +L C E K + AD++ +G +L+
Sbjct: 17 VDKKVLVILRDGRKLIGLFRSYDQFANFLLESCVERLHYK---LEYADKD----IGVLLV 69
Query: 321 RGENIVSL 344
RGEN+V+L
Sbjct: 70 RGENVVAL 77
>UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Piroplasmida|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Theileria parva
Length = 94
Score = 44.4 bits (100), Expect = 0.002
Identities = 27/70 (38%), Positives = 39/70 (55%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
++Q I V VI D R F+G K FD+ NL+L +C E ++ ++ + E LG
Sbjct: 5 LEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNCLE--RVYHPDAPVEELE----LG 58
Query: 309 FVLLRGENIV 338
LLRG+NIV
Sbjct: 59 IYLLRGDNIV 68
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 44.4 bits (100), Expect = 0.002
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
++ +++ RV + L+ +RT +GT +AFD H N++L D E I N++ E+R
Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSESERR-CE 64
Query: 309 FVLLRGENIVSLT 347
V +RG+ + ++
Sbjct: 65 MVFIRGDTVTLIS 77
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 44.0 bits (99), Expect = 0.003
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
++ +IN V VI D R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 309 FVLLRGENI 335
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicing
factor; n=1; Ostreococcus tauri|Rep: Small Nuclear
ribonucleoprotein splicing factor - Ostreococcus tauri
Length = 110
Score = 43.6 bits (98), Expect = 0.004
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
++ RV V+ D R +GT + FD+ N+IL DC E ++ S S E+ LG ++
Sbjct: 12 VHARVHVLTNDGRHVVGTLRGFDQVTNVILEDCAE--RVYSSESGV----EEAPLGVYMI 65
Query: 321 RGENI 335
RG+N+
Sbjct: 66 RGDNV 70
>UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein,
putative; n=4; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein, putative - Plasmodium berghei
Length = 108
Score = 42.7 bits (96), Expect = 0.007
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +3
Query: 123 NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 302
N +++ +N ++RV R +G D NL+L EEF I+ N E+ R
Sbjct: 19 NDIKKFMNQKIRVKFDGGREVVGNLIGHDAIFNLVLDKTEEF--IRDPNDSYVITEKSRN 76
Query: 303 LGFVLLRGENIVSLT 347
+G ++ RG ++ +T
Sbjct: 77 IGLIVARGTSVALIT 91
>UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p -
Drosophila melanogaster (Fruit fly)
Length = 103
Score = 42.3 bits (95), Expect = 0.010
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 311
++ +V V +++ R G AFD+H+N++LGD EE +I + + + KRT+
Sbjct: 26 LDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAKRTIPM 85
Query: 312 VLLRGENIV 338
+ +RG+ ++
Sbjct: 86 LFVRGDGVI 94
>UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 107
Score = 42.3 bits (95), Expect = 0.010
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +3
Query: 123 NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 302
N +++ + ++++I D + IG K D+ +N IL DC E N+KT
Sbjct: 15 NPLEKLLFKKIQIITTDGKVLIGILKGLDQALNSILSDCVERVFSSENNTKTIKH----- 69
Query: 303 LGFVLLRGENIVSL 344
G LLRG+NI L
Sbjct: 70 -GLYLLRGDNIAVL 82
>UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN D2 - Encephalitozoon cuniculi
Length = 135
Score = 42.3 bits (95), Expect = 0.010
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 153 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR---EEKRTLGFVLLR 323
V V L+ +R +G A+D+H NL++ D +E + KN R E R LG V +R
Sbjct: 35 VLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKNKGRKKRQGCEFSRKLGKVFIR 94
Query: 324 GENIV 338
G+ ++
Sbjct: 95 GDTVI 99
>UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=1; Schizosaccharomyces pombe|Rep: U6 snRNA-associated
Sm-like protein LSm8 - Schizosaccharomyces pombe
(Fission yeast)
Length = 94
Score = 42.3 bits (95), Expect = 0.010
Identities = 27/62 (43%), Positives = 33/62 (53%)
Frame = +3
Query: 150 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 329
RV+VI D R +G+ K FD NLIL D F +I S + E LG LLRGE
Sbjct: 10 RVQVITNDGRVVLGSLKGFDHTTNLILSD--SFERIISMDQDM----ETIPLGVYLLRGE 63
Query: 330 NI 335
N+
Sbjct: 64 NV 65
>UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Plasmodium vivax
Length = 95
Score = 41.9 bits (94), Expect = 0.013
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
++ ++ + VI DSR F G K FD+ N+ILG+C E R K + EK +LG
Sbjct: 6 IESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCYE-RIYK-------ESLEKISLG 57
Query: 309 FVLLRGENI 335
++RG+ +
Sbjct: 58 LYIIRGDTV 66
>UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative;
n=2; Theileria|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 104
Score = 41.5 bits (93), Expect = 0.017
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+ +H+N V V R G + D NL+L D E+ K S +SK EKR LG
Sbjct: 17 LNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKLTG--EKRNLG 74
Query: 309 FVLLRGENI 335
++ RG ++
Sbjct: 75 LLVARGTSV 83
>UniRef50_A6RWH0 Cluster: Predicted protein; n=10;
Pezizomycotina|Rep: Predicted protein - Botryotinia
fuckeliana B05.10
Length = 98
Score = 41.5 bits (93), Expect = 0.017
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+ ++N +V ++ DSRT +GT + D+ NL+L E R I+ A E G
Sbjct: 3 LSSYVNKKVLILTADSRTLVGTLLSCDQQTNLVLSQTIE-RIIRPPEDIEASSEVPH--G 59
Query: 309 FVLLRGENIV 338
L+RG+N+V
Sbjct: 60 LYLIRGDNVV 69
>UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2;
n=1; Guillardia theta|Rep: Small nuclear
ribonucleoprotein SM D2 - Guillardia theta (Cryptomonas
phi)
Length = 82
Score = 41.1 bits (92), Expect = 0.022
Identities = 22/66 (33%), Positives = 38/66 (57%)
Frame = +3
Query: 153 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 332
V +IL++++ IG +DKH+NL+L + E K +N + + + + V LRG+N
Sbjct: 17 VMIILRNNKRMIGKIINYDKHLNLLLENVNEI-KFVGENFSELIKIKSKFIPKVFLRGDN 75
Query: 333 IVSLTI 350
IV + I
Sbjct: 76 IVLILI 81
>UniRef50_A2F7C1 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 99
Score = 41.1 bits (92), Expect = 0.022
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +3
Query: 81 YLPN--HSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 248
Y+P+ H + G ++ +N ++R+ L D R ++GTF AFDK N +L +E+
Sbjct: 6 YIPSILHLPEHPTGAVKEVMDLLNTQLRLELNDERVYVGTFTAFDKFGNFVLTKADEY 63
>UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=6; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm7 - Saccharomyces cerevisiae (Baker's yeast)
Length = 115
Score = 41.1 bits (92), Expect = 0.022
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 150 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF-RKIKSKNSKTADREEKRTLGFVLLRG 326
++RV L + IG K +D+ MNL+L D E+ +N+ + R LG ++RG
Sbjct: 37 KIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRG 96
Query: 327 ENIVSLT 347
+VSL+
Sbjct: 97 TILVSLS 103
>UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Babesia bovis|Rep: Small nuclear ribonucleoprotein,
putative - Babesia bovis
Length = 162
Score = 40.7 bits (91), Expect = 0.029
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 144 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE-FRKIKSKNSKTADREEKRTLGFVLL 320
N +V + + +R +G KAFD+H N+IL D E + ++ K + R + + L
Sbjct: 90 NSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWTEVSGGGGKKKYMNKDRYISRLFL 149
Query: 321 RGENIV 338
RG+++V
Sbjct: 150 RGDSVV 155
>UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 84
Score = 40.7 bits (91), Expect = 0.029
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = +3
Query: 150 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 329
RV+V +Q+ + G A+D+H N+ILGD E KN K + + + + +RG+
Sbjct: 18 RVKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKNGKFIPVRQNQ-IDMLFVRGD 76
Query: 330 NIVSL 344
IVS+
Sbjct: 77 RIVSI 81
>UniRef50_Q0UHH8 Cluster: Predicted protein; n=2;
Pezizomycotina|Rep: Predicted protein - Phaeosphaeria
nodorum (Septoria nodorum)
Length = 98
Score = 40.7 bits (91), Expect = 0.029
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+ ++N RV V+ D RT IGT + D MNL+L + E R I+ + + E+ LG
Sbjct: 3 LNAYLNKRVTVLTLDGRTMIGTLFSCDGSMNLVLQEAVE-RIIRPREEEVP--SEEVPLG 59
Query: 309 FVLLRGENI 335
++RG+++
Sbjct: 60 LYIVRGDSV 68
>UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protein -
Methanosarcina acetivorans
Length = 74
Score = 40.3 bits (90), Expect = 0.039
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 120 NNKMQQHINYRVRVILQ-DSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 296
N K+Q+ + R+RV ++ D GT K+ D +MNL L D E + E+
Sbjct: 4 NKKVQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVR----------GEKV 53
Query: 297 RTLGFVLLRGENIVSLT 347
R+LG V+LRG NI+ +T
Sbjct: 54 RSLGSVVLRGNNIILIT 70
>UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=39; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm3 - Homo sapiens (Human)
Length = 102
Score = 40.3 bits (90), Expect = 0.039
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 311
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 312 VLLRGENIV 338
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 39.9 bits (89), Expect = 0.051
Identities = 25/84 (29%), Positives = 41/84 (48%)
Frame = +3
Query: 96 SDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 275
S +T+ M +++ V V L+ G K +D+H+N+ILGD EE +
Sbjct: 2 SGPITLPTLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGETSI---- 57
Query: 276 TADREEKRTLGFVLLRGENIVSLT 347
R LG L+RG+++V +T
Sbjct: 58 -------RRLGLTLVRGDSVVVIT 74
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 39.9 bits (89), Expect = 0.051
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
IN +V ++LQ +R F GT FD +N+IL D E+ + ++ + + + G +LL
Sbjct: 16 INQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEW--LIDPEDESRNEKVMQHHGRMLL 73
Query: 321 RGENIVSL 344
G NI L
Sbjct: 74 SGNNIAIL 81
>UniRef50_Q6NNL2 Cluster: At4g18372; n=4; Magnoliophyta|Rep:
At4g18372 - Arabidopsis thaliana (Mouse-ear cress)
Length = 78
Score = 39.1 bits (87), Expect = 0.090
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 165 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
++D R F+G F DK N+IL D E+R I+ + E+R LG +L+
Sbjct: 5 IKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPT---EQRCLGMILI 53
>UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 101
Score = 39.1 bits (87), Expect = 0.090
Identities = 18/73 (24%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE---EKRTLGF 311
+N ++ + D+ F G + FDKH NL+L D E K ++ ++++ ++ +++ +
Sbjct: 27 LNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKKKVVIKEKFIPK 86
Query: 312 VLLRGENIVSLTI 350
+ RG+ ++ +TI
Sbjct: 87 LFFRGDAVILITI 99
>UniRef50_A7P4Z8 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 145
Score = 39.1 bits (87), Expect = 0.090
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +3
Query: 87 PNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSK 266
PN S+ +T K++ + R+ V + D R F+G+F DK N+IL D E+R S
Sbjct: 51 PNGSNPVT-----KVRMLLFRRMLVGVSDGRFFLGSFHCMDKQGNIILQDTVEYR---ST 102
Query: 267 NSKTADREEKRTLGFVLL 320
+ E+R LG +L+
Sbjct: 103 RRSSPSPMEQRCLGLILI 120
>UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 74
Score = 39.1 bits (87), Expect = 0.090
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 177 RTFIGTFKAFDKHMNLILGDCEEFRKIKSK-NSKTADREEKRTLGFVLLRGENIV 338
R IG A+D H+N+IL + E K K N + ++ +R L V +RG++I+
Sbjct: 13 RELIGKLDAYDNHLNMILSNVRETYKYSVKENDEETVKKMERNLDMVFVRGDSII 67
>UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE,
putative; n=12; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein SmE, putative - Aspergillus clavatus
Length = 95
Score = 39.1 bits (87), Expect = 0.090
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+QQ + + Q + G + FD+ MNL++ D E R +KT D E++R LG
Sbjct: 25 LQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRMA----TKT-DEEKRRPLG 79
Query: 309 FVLLRGENI 335
+LL+G+N+
Sbjct: 80 QILLKGDNV 88
>UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 80
Score = 39.1 bits (87), Expect = 0.090
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = +3
Query: 165 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 344
L++++T GT K FD HMNL L +N++ E+ +G VLLRG+NI+++
Sbjct: 24 LRNNKTVQGTLKDFDIHMNLTL-----------ENAEDVSEEKPNPIGKVLLRGDNILAI 72
Query: 345 TI 350
++
Sbjct: 73 SL 74
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 39.1 bits (87), Expect = 0.090
Identities = 24/73 (32%), Positives = 40/73 (54%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+ + IN V + L+ ++T G FD+HMNL+L EE A+ E K LG
Sbjct: 10 LDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEI---------PAEGEAK-GLG 59
Query: 309 FVLLRGENIVSLT 347
+++RG+N+V ++
Sbjct: 60 SIVVRGDNVVMIS 72
>UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 129
Score = 38.7 bits (86), Expect = 0.12
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
++ ++ V+L+D R FIG + FD+ N++L D E D + LG +
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIE-------RIYVGDCYSDKNLGLFFI 61
Query: 321 RGENIVSL 344
RG+N+V L
Sbjct: 62 RGDNVVIL 69
>UniRef50_Q4UC24 Cluster: U6 snRNA-associated Sm-like potein,
putative; n=1; Theileria annulata|Rep: U6
snRNA-associated Sm-like potein, putative - Theileria
annulata
Length = 113
Score = 38.7 bits (86), Expect = 0.12
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = +3
Query: 153 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 332
V VI D R F+G K FD+ NL+L +C E ++ ++ + E LG LLRG+N
Sbjct: 20 VFVISVDGRVFVGVLKGFDQLTNLVLYNCLE--RVYHPDAPVEELE----LGIYLLRGDN 73
Query: 333 IVSLTI 350
+ + I
Sbjct: 74 MYRIYI 79
>UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=26; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm7 - Homo sapiens (Human)
Length = 103
Score = 38.7 bits (86), Expect = 0.12
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+ ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 309 FVLLRGENIV 338
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 100
Score = 38.3 bits (85), Expect = 0.16
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+ + I+ VRV L R GT K +D+ +NL+L + E + K +D E R LG
Sbjct: 10 LARFIDRGVRVKLSGGREVTGTLKGYDQLLNLVLDEAIEHLRDAEDALKISD--ETRALG 67
Query: 309 FVLLRGENIV 338
++ RG +++
Sbjct: 68 LLVCRGTSVM 77
>UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2;
Cryptosporidium|Rep: Small nuclear ribonucleoprotein -
Cryptosporidium parvum Iowa II
Length = 106
Score = 38.3 bits (85), Expect = 0.16
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +3
Query: 144 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE---EKRTLGFV 314
N ++ V +++R +G KAFD+H NL+L D E K+ K + + R + +
Sbjct: 32 NTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGKKGSAKYINKDRFISKL 91
Query: 315 LLRGENIV 338
+RG++++
Sbjct: 92 FVRGDSVI 99
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 38.3 bits (85), Expect = 0.16
Identities = 25/70 (35%), Positives = 39/70 (55%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
+N V V L++ ++G + D MNL+L DC E+R+ T+D K G VL+
Sbjct: 16 LNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCTEYRE------GTSDPVAK--YGRVLI 67
Query: 321 RGENIVSLTI 350
RG NI+ ++I
Sbjct: 68 RGSNILFISI 77
>UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=2;
Cryptosporidium|Rep: U6 snRNA-associated sm-like protein
- Cryptosporidium hominis
Length = 98
Score = 37.9 bits (84), Expect = 0.21
Identities = 21/72 (29%), Positives = 43/72 (59%)
Frame = +3
Query: 120 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKR 299
++ ++Q IN V V+ D++ ++G FD+ N++L +C E KI +K+ ++ E
Sbjct: 3 SSTLEQFINKTVSVLTVDNKVYVGNLVGFDQLTNIVLQNCSE--KIYNKD---LNKVETV 57
Query: 300 TLGFVLLRGENI 335
++ ++LRG+ I
Sbjct: 58 SMESLVLRGDCI 69
>UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein lsm-1 - Caenorhabditis elegans
Length = 125
Score = 37.9 bits (84), Expect = 0.21
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +3
Query: 135 QHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFV 314
+ ++ ++ V+L+D R IG ++ D+ NLIL D E ++ +T GF+
Sbjct: 16 EQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ-------GFM 68
Query: 315 LLRGENI 335
L+RGEN+
Sbjct: 69 LIRGENV 75
>UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 111
Score = 37.9 bits (84), Expect = 0.21
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +3
Query: 159 VILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 338
+ L+ +R G KA D+H N+IL E +K + A +R + + LRG+N++
Sbjct: 39 IALRSNRKLYGYIKAVDRHWNMILEHVIEITPTPAKPGQPAAAPIQRRINRLFLRGDNVI 98
Query: 339 SL 344
+
Sbjct: 99 CI 100
>UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1;
Filobasidiella neoformans|Rep: Sm-like protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 95
Score = 37.9 bits (84), Expect = 0.21
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 150 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLL 320
RV + L+ R G A+D HMN+++ EE + + R E+RT + +
Sbjct: 23 RVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQPLPPRIERRTAEMLFV 82
Query: 321 RGENIVSLT 347
RG+ ++ L+
Sbjct: 83 RGDGVILLS 91
>UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Ostreococcus tauri|Rep: Putative small nuclear
ribonucleoprotein E - Ostreococcus tauri
Length = 101
Score = 37.5 bits (83), Expect = 0.27
Identities = 22/75 (29%), Positives = 41/75 (54%)
Frame = +3
Query: 120 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKR 299
N ++++ ++R+ L +R+ G + FD+ +NL+L D S N T EK
Sbjct: 24 NRSTLRYMDKKLRLRLNGNRSVTGILRGFDQFLNLVLDD--------STNDTTT---EKT 72
Query: 300 TLGFVLLRGENIVSL 344
+G V++RG ++VS+
Sbjct: 73 PMGMVVVRGNSVVSM 87
>UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 83
Score = 37.5 bits (83), Expect = 0.27
Identities = 27/75 (36%), Positives = 37/75 (49%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
K+Q HIN V + Q R GT +FD +NL+L +E R++ S +R L
Sbjct: 11 KLQSHINKEVVIQFQGGRQVKGTLLSFDNQLNLVL---DEVRELPS----------QRIL 57
Query: 306 GFVLLRGENIVSLTI 350
G V+ RG I S I
Sbjct: 58 GLVICRGALINSFAI 72
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 37.5 bits (83), Expect = 0.27
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 245
+Q I +V V L+DS G ++FD+H+NL+L D EE
Sbjct: 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEE 54
>UniRef50_Q54HH8 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 257
Score = 37.1 bits (82), Expect = 0.36
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Frame = +3
Query: 84 LPNHSDKMTIGKNNKMQQHINYR--VRVILQDSRTFIGTFK----AFDKHMNLILGDCEE 245
L N S+K T G + +++ + + ++V+++ + G + AFDKHMN+IL D EE
Sbjct: 155 LKNISNKFTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEE 214
Query: 246 FRKIKSKNSKTADREE------KRTLGFVLLRGENIVSLTI 350
+ T ++ + KR G + ++G+ +VS+ +
Sbjct: 215 EYDLLKSLPSTRNQNQPIQPKIKRYYGQLFIKGDTVVSVIL 255
>UniRef50_Q6BIX4 Cluster: Similar to CA2640|IPF2930 Candida albicans
IPF2930 Suppressor of PAB1; n=3; Saccharomycetaceae|Rep:
Similar to CA2640|IPF2930 Candida albicans IPF2930
Suppressor of PAB1 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 91
Score = 37.1 bits (82), Expect = 0.36
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +3
Query: 153 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 332
++ L+++R F GT + FD N+I+ +C E R I D ++ LG L+RG N
Sbjct: 4 LKEFLENARLFEGTLQGFDNSTNVIINNCIE-RLIYPDEQ---DDNQEIPLGLYLMRGGN 59
Query: 333 IVSL 344
IV +
Sbjct: 60 IVCI 63
>UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 91
Score = 37.1 bits (82), Expect = 0.36
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
++ +N V V ++D +IGT D MN++L +C+E+ + K R G
Sbjct: 15 LKSAVNQIVLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEY----GDDGKPIAR-----YG 65
Query: 309 FVLLRGENIVSLTI 350
VL+RG +IV ++I
Sbjct: 66 KVLIRGSHIVFISI 79
>UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm3,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm3, putative - Plasmodium vivax
Length = 91
Score = 36.7 bits (81), Expect = 0.48
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = +3
Query: 99 DKMTIGKNNKMQQHINYRVRVILQ--DSRTFIGTFKAFDKHMNLILGDCEE-FRKIKSKN 269
+K+ + +N +N V L+ R G A+D H+N+IL + E +++ +N
Sbjct: 2 EKIALIQNPLDYIRLNMEEEVFLKCKGDREIRGKLDAYDNHLNMILSNAHETYKQSVVEN 61
Query: 270 SKTADREEKRTLGFVLLRGENIV 338
+ + ++ +R L V +RG++I+
Sbjct: 62 DEESVKKIERNLDMVFVRGDSII 84
>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: U6 snRNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 131
Score = 36.7 bits (81), Expect = 0.48
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+ Q ++ +RV R G K +D+ MNL++ D E + D R+LG
Sbjct: 29 LAQFVDKSIRVKFMGGREATGILKGYDQLMNLVMDDVVE---------EYEDGRPTRSLG 79
Query: 309 FVLLRGENIV 338
V+LRG NIV
Sbjct: 80 LVVLRGPNIV 89
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 36.3 bits (80), Expect = 0.63
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +3
Query: 129 MQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 302
M Q I R+++ L Q G FD++MNL+L D EE N K ++ +++
Sbjct: 10 MTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI------NVK---KDTRKS 60
Query: 303 LGFVLLRGENI 335
LG +LL+G+NI
Sbjct: 61 LGRILLKGDNI 71
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 36.3 bits (80), Expect = 0.63
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3
Query: 150 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 245
RV V+LQ++ + G +FD+HMNLIL + EE
Sbjct: 64 RVSVLLQNNSSITGLLASFDEHMNLILINAEE 95
>UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 67
Score = 36.3 bits (80), Expect = 0.63
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 189 GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLT 347
GT +FD++MN++L DCEE+ D +K TLG V +R N++ ++
Sbjct: 5 GTLVSFDEYMNILLNDCEEW----------IDNTKKGTLGKVFIRCNNVLYIS 47
>UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 107
Score = 35.9 bits (79), Expect = 0.84
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+Q+ +N V V + +F G +D+HMNL+L EE I N + RE KR +G
Sbjct: 8 LQRLLNGLVTVTTVEGLSFQGILMNYDEHMNLVLRQVEE---IPQDNQQ---REPKR-IG 60
Query: 309 FVLLRGENI 335
+++RG N+
Sbjct: 61 LMVMRGCNV 69
>UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 234
Score = 35.9 bits (79), Expect = 0.84
Identities = 14/43 (32%), Positives = 30/43 (69%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN 269
++ +V V+L+D + +IG +++D+ NL+L +C E +I ++N
Sbjct: 101 VDKKVDVLLRDEKEYIGILRSYDQFANLVLTECHE--RIAARN 141
>UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;
Eukaryota|Rep: U6 snRNP-associated protein Lsm7 -
Schizosaccharomyces pombe (Fission yeast)
Length = 113
Score = 35.9 bits (79), Expect = 0.84
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+ ++ + R++ R G K FD+ MNL+L D EE + T R LG
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTG---AIRKLG 84
Query: 309 FVLLRGENIV 338
V++RG +V
Sbjct: 85 LVVVRGTTLV 94
>UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Homo
sapiens (Human)
Length = 92
Score = 35.9 bits (79), Expect = 0.84
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 309 FVLLRGENIVSL 344
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm3; n=8; Ascomycota|Rep: Probable U6
snRNA-associated Sm-like protein LSm3 -
Schizosaccharomyces pombe (Fission yeast)
Length = 93
Score = 35.9 bits (79), Expect = 0.84
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 153 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK---RTLGFVLLR 323
V V L+ R G A+D+H+N++LGD EE I D+ K + + +R
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81
Query: 324 GENIV 338
G++++
Sbjct: 82 GDSVI 86
>UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 35.5 bits (78), Expect = 1.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 114 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 245
G + ++ R+++ L RT IGT FD MNL+L C+E
Sbjct: 13 GYQADLNKYFGKRLKIKLNAKRTIIGTVIGFDIFMNLVLDHCKE 56
>UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear
ribonucleoprotein; n=2; Thermoprotei|Rep: 90aa long
hypothetical small nuclear ribonucleoprotein -
Sulfolobus tokodaii
Length = 90
Score = 35.5 bits (78), Expect = 1.1
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 144 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLR 323
N V V L+D ++G + D MNL+L DC E R+ TA+ K G VL+R
Sbjct: 22 NKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETRE------GTAEPVAK--YGRVLIR 73
Query: 324 GENIVSLTI 350
G NI+ +++
Sbjct: 74 GSNILFISV 82
>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
nuclear ribonucleoprotein polypeptide G - Hyacinthus
orientalis (Common hyacinth)
Length = 96
Score = 35.1 bits (77), Expect = 1.5
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = +3
Query: 132 QQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGF 311
Q H ++++ L +R +GT + FD+ MNL++ N+ + +K +G
Sbjct: 27 QVHGTSKLQIKLNANRVVVGTLRGFDQFMNLVI-----------DNTMEVNGNDKNDIGM 75
Query: 312 VLLRGENIVSL 344
V++RG ++V +
Sbjct: 76 VVIRGNSVVMI 86
>UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr11 scaffold_13, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 242
Score = 35.1 bits (77), Expect = 1.5
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 120 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCEEFRKIKSKNSKTADREEK 296
+ + +++ ++ V+L+D R +G ++FD+ N +L G CE R I D
Sbjct: 12 STSLASYLDKKLLVLLRDGRKLLGVLRSFDQFANAVLEGACE--RAI------VGDIYCD 63
Query: 297 RTLGFVLLRGENIVSL 344
LG ++RGEN+V L
Sbjct: 64 IPLGLYVIRGENVVLL 79
Score = 33.1 bits (72), Expect = 5.9
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 150 RVRVILQDSRTFIGTFKAFDKHMNLIL-GDCEEFRKIKSKNSKTADREEKRTLGFVLLRG 326
++ V+L+D R +G ++FD+ N +L G CE R I D LG ++RG
Sbjct: 136 KLLVLLRDGRKLLGVLRSFDQFANAVLEGACE--RAI------VGDIYCDIPLGLYVIRG 187
Query: 327 ENIVSL 344
EN+V L
Sbjct: 188 ENVVLL 193
>UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 126
Score = 35.1 bits (77), Expect = 1.5
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +3
Query: 135 QHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFV 314
++++ R+ V L+D IGT ++FD+ N++L E R I K LG
Sbjct: 15 ENLDKRLLVALRDGSNIIGTLRSFDQFANIVLESAVE-RIIVGKMFSDI------PLGLY 67
Query: 315 LLRGENIV 338
++RGEN+V
Sbjct: 68 IVRGENVV 75
>UniRef50_Q7R4T3 Cluster: GLP_440_43387_42998; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_440_43387_42998 - Giardia lamblia
ATCC 50803
Length = 129
Score = 35.1 bits (77), Expect = 1.5
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
K+ ++ + V + + GT A D+HMN+++ C ++K E R+L
Sbjct: 6 KLVNYVGSPLTVHALNGYVYTGTLLAIDRHMNMVISSC--CCRVK---------ESARSL 54
Query: 306 GFVLLRGENIVSLT 347
G V+LRGE + T
Sbjct: 55 GLVVLRGEEVAFFT 68
>UniRef50_Q6QA14 Cluster: Lsm8p; n=6; Trypanosomatidae|Rep: Lsm8p -
Trypanosoma brucei
Length = 129
Score = 35.1 bits (77), Expect = 1.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 245
+ Q++ RV V+ D R +G A D+ MNL+L C E
Sbjct: 2 LSQYLRRRVSVVTVDGRYLVGVLHAADQLMNLVLTSCAE 40
>UniRef50_Q2HFG8 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 189
Score = 35.1 bits (77), Expect = 1.5
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 251
+++ IN +RV DSR F GTF D NLIL E+R
Sbjct: 17 LERLINKNLRVTTTDSRMFWGTFVCTDHESNLILKHAYEYR 57
>UniRef50_Q1DNR5 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 101
Score = 35.1 bits (77), Expect = 1.5
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 251
++ +N VR+ D+R F+G FK D N+IL + E+R
Sbjct: 10 LESLLNRTVRLHTSDTRLFVGLFKCTDNDRNIILSNTYEYR 50
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 35.1 bits (77), Expect = 1.5
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +3
Query: 153 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 332
V V L+ +T G +FD H+NL+L DC E D + + LG VL+RG++
Sbjct: 15 VIVELKTGKTLRGRLVSFDGHLNLVLDDCVEI-----------DEDSEVRLGRVLIRGDS 63
Query: 333 IVSLT 347
+ ++
Sbjct: 64 VTLIS 68
>UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanococcus|Rep: Like-Sm ribonucleoprotein, core -
Methanococcus maripaludis
Length = 72
Score = 35.1 bits (77), Expect = 1.5
Identities = 22/70 (31%), Positives = 38/70 (54%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
IN V V L+D + G KA+D HMN+ L +N+K + EEK +++
Sbjct: 15 INTNVTVFLKDGKVVKGRLKAYDLHMNVAL-----------ENAKIENDEEKE-FPMLVV 62
Query: 321 RGENIVSLTI 350
RG+N++ +++
Sbjct: 63 RGDNVLYVSL 72
>UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homolog,
U6 small nuclear RNA associated; n=3; Homo/Pan/Gorilla
group|Rep: PREDICTED: similar to LSM3 homolog, U6 small
nuclear RNA associated - Homo sapiens
Length = 101
Score = 34.7 bits (76), Expect = 1.9
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 150 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLL 320
R+ V +++ R G +D+H+N+ILGD EE +I + + K+ + L
Sbjct: 27 RICVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIEIDEETYEETYESTKQNIPVFFL 86
Query: 321 RGENI 335
RG+ I
Sbjct: 87 RGDGI 91
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 34.7 bits (76), Expect = 1.9
Identities = 12/40 (30%), Positives = 27/40 (67%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 248
+ + I ++++V++ + + F GT FD ++N++L + EEF
Sbjct: 27 IDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEEF 66
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 34.7 bits (76), Expect = 1.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 102 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 245
K + +++H+N ++ V L+D ++G A D MNLIL D E
Sbjct: 7 KQLVNPFKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIE 54
>UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 92
Score = 34.7 bits (76), Expect = 1.9
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +3
Query: 189 GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 344
G FD++MNL+L D EE +K+KN ++ LG ++L+G+NI L
Sbjct: 45 GCIIGFDEYMNLVLDDAEEVH-MKTKN--------RKPLGRIMLKGDNITLL 87
>UniRef50_Q4Q3L7 Cluster: Small nuclear ribonucleoprotein SmD2; n=7;
Trypanosomatidae|Rep: Small nuclear ribonucleoprotein
SmD2 - Leishmania major
Length = 103
Score = 34.3 bits (75), Expect = 2.6
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +3
Query: 150 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 329
RV + ++S+ + AFDKH NL+L +E +S S+ +++RT+ + LRGE
Sbjct: 41 RVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI--TESHGSE----QKQRTIENLFLRGE 94
Query: 330 NIV 338
+++
Sbjct: 95 SVI 97
>UniRef50_Q7SG45 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 178
Score = 34.3 bits (75), Expect = 2.6
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +3
Query: 66 PNI**YLPNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 245
PNI +LP D T N+ + N +RV + D R F G FK D N+IL E
Sbjct: 5 PNIT-FLPEDRDDATDWLNSLL----NKNLRVSVTDGRMFWGQFKCVDAESNIILHSAYE 59
Query: 246 FR 251
+R
Sbjct: 60 YR 61
>UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 134
Score = 34.3 bits (75), Expect = 2.6
Identities = 20/81 (24%), Positives = 41/81 (50%)
Frame = +3
Query: 102 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 281
KM ++++ ++ R+ V +Q R GT + FD +NL++ + E ++ N
Sbjct: 47 KMAKVSQPELKRFLDKRIAVNIQGGRKIQGTLRGFDMFLNLVVDEAIEQVHPEAGNPNVW 106
Query: 282 DREEKRTLGFVLLRGENIVSL 344
++ G V++RG ++ SL
Sbjct: 107 QDGDR--CGTVVVRGNSVTSL 125
>UniRef50_A4RG53 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 128
Score = 34.3 bits (75), Expect = 2.6
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 251
+N +RV D+R F G FK D NLIL E+R
Sbjct: 14 LNKYLRVTTTDTRMFYGVFKCTDPDRNLILAHAHEYR 50
>UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 110
Score = 34.3 bits (75), Expect = 2.6
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +3
Query: 153 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 332
V + L+++ I KAFD+H N++L + +E K K +RE R + + LRG++
Sbjct: 44 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEK-KGKNVINRE--RFISKLFLRGDS 100
Query: 333 IV 338
++
Sbjct: 101 VI 102
>UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;
Saccharomycetaceae|Rep: Small nuclear ribonucleoprotein
E - Saccharomyces cerevisiae (Baker's yeast)
Length = 94
Score = 34.3 bits (75), Expect = 2.6
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +3
Query: 123 NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 302
N +QQ + + Q G FD+ MN+++ + E + S + K D E+
Sbjct: 19 NFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEI-PVNSADGKE-DVEKGTP 76
Query: 303 LGFVLLRGENIVSLT 347
LG +LL+G+NI +T
Sbjct: 77 LGKILLKGDNITLIT 91
>UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein, putative - Cryptosporidium parvum
Iowa II
Length = 92
Score = 33.9 bits (74), Expect = 3.4
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 150 RVRVILQDSRTFI--GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLR 323
RV++ L D + + G + FD++MN++L E K +T ++G +LLR
Sbjct: 29 RVQIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKKEVRRET-------SVGQLLLR 81
Query: 324 GENI 335
GENI
Sbjct: 82 GENI 85
>UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like - Yarrowia lipolytica
(Candida lipolytica)
Length = 144
Score = 33.9 bits (74), Expect = 3.4
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
I+ +V V L+ R F G ++FD+ NL+L D + K + K E + G ++
Sbjct: 24 IDRKVVVTLRGGRKFFGILRSFDQFANLVLQD--TYEKYFAVPEKVYGEEYR---GTYII 78
Query: 321 RGENI 335
RGEN+
Sbjct: 79 RGENV 83
>UniRef50_O42978 Cluster: U6 snRNP-associated protein Lsm5; n=4;
Eukaryota|Rep: U6 snRNP-associated protein Lsm5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 80
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MTI + + I + VI++ R F GT FD ++N++L D E+ + K ++
Sbjct: 3 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62
>UniRef50_A4RDX2 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 992
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 525 LVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEHFQARP*LPVRE 388
++P V++ A LLLWQ+ PE LRPG + E+ + L R+
Sbjct: 662 VMPQVLKAAGLLLWQEGRSPEALRPGTYVPLNAENLRVHTELQQRD 707
>UniRef50_A2QP90 Cluster: Contig An07c0280, complete genome; n=3;
Trichocomaceae|Rep: Contig An07c0280, complete genome -
Aspergillus niger
Length = 275
Score = 33.9 bits (74), Expect = 3.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 251
I +RV D+R F+GTFK D N+IL E+R
Sbjct: 14 IGRTLRVHATDTRIFVGTFKCTDAARNIILASTYEYR 50
>UniRef50_A2Q9H8 Cluster: Contig An01c0290, complete genome; n=2;
Eurotiomycetidae|Rep: Contig An01c0290, complete genome
- Aspergillus niger
Length = 527
Score = 33.9 bits (74), Expect = 3.4
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 624 DPCQEELPSFLEE-GHPSWGLLAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPE 463
DP + L SFL E G W + E+ K+ DFLV +MA+ +W+D+ D E
Sbjct: 119 DPVAKFLRSFLHEFGKRQWMV---HEQVKIISDFLVFITNKMAQCEVWRDVSDSE 170
>UniRef50_P62316 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Homo sapiens (Human)
Length = 118
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 144 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 311
N +V + ++++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 312 VLLRGENIV 338
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=27; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm5 - Homo sapiens (Human)
Length = 91
Score = 33.9 bits (74), Expect = 3.4
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
I R+ ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 321 RGENIVSL 344
G NI L
Sbjct: 75 NGNNITML 82
>UniRef50_A7Q0D5 Cluster: Chromosome chr7 scaffold_42, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr7 scaffold_42, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 170
Score = 33.5 bits (73), Expect = 4.5
Identities = 19/89 (21%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Frame = +3
Query: 90 NHSDKMTIGKNNKMQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEE-FRKI- 257
N ++ + G + + + +V++ ++++ +G +AFD+H N++L + E + ++
Sbjct: 75 NEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 134
Query: 258 -KSKNSKTADREEK-RTLGFVLLRGENIV 338
K K A+ K R + + LRG++++
Sbjct: 135 KTGKGKKKANPVNKDRFISKMFLRGDSVI 163
>UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 152
Score = 33.5 bits (73), Expect = 4.5
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 165 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 275
L+++R +G KAFD+HMN+IL + E SK +K
Sbjct: 76 LRNNRKHLGRVKAFDRHMNMILENLTEMWIEISKETK 112
>UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotein
G; n=14; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein G - Drosophila melanogaster (Fruit
fly)
Length = 76
Score = 33.5 bits (73), Expect = 4.5
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
+++++++ R+ + L R G + FD MN++L D E K +KN+ +
Sbjct: 8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNN----------I 57
Query: 306 GFVLLRGENIV 338
G V++RG +IV
Sbjct: 58 GMVVIRGNSIV 68
>UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 89
Score = 33.1 bits (72), Expect = 5.9
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 189 GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 335
GT FD+++NL+L D EE +K+ +R +G +LL+GENI
Sbjct: 41 GTLSGFDQYINLVLTDTEEV-YLKTNT--------RRKIGTILLKGENI 80
>UniRef50_Q0M0F8 Cluster: YhhN-like; n=1; Caulobacter sp. K31|Rep:
YhhN-like - Caulobacter sp. K31
Length = 210
Score = 33.1 bits (72), Expect = 5.9
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 606 LPSFLEEGHPSWGLLAFEEEQKVDHDF--LVPCVVEMARLLLWQDLEDPEVLRPGQCLY 436
L +FL GH ++GLL + E VD F P VV A ++LW+ L+P LY
Sbjct: 80 LAAFLA-GHVAYGLLFWRERGAVDGAFWATAPLVVLAAAVMLWRLWPSLGALKPAVALY 137
>UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 33.1 bits (72), Expect = 5.9
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 198 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 335
K FD++MNL+L + EE IK ++ +++LG +LL+G+NI
Sbjct: 97 KGFDEYMNLVLDEAEEI-NIK--------KDTRKSLGRILLKGDNI 133
>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
Sm-like protein, putative - Theileria annulata
Length = 90
Score = 33.1 bits (72), Expect = 5.9
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +3
Query: 150 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 329
++ +I+++ + GT + FD +MN++L D ++ S +AD + L L+ G
Sbjct: 23 KIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDY-------SFSADGVKTTELNDALVNGN 75
Query: 330 NIVSL 344
N+ L
Sbjct: 76 NVAML 80
>UniRef50_Q4N780 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria parva
Length = 162
Score = 33.1 bits (72), Expect = 5.9
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
++ + + V L+D ++G FK+FD+ N+++ D +KI N ++ G
Sbjct: 17 LEDELGSLIWVTLRDDTFYVGLFKSFDQFGNIVITDA--VKKIILNNKRSF---SDIYCG 71
Query: 309 FVLLRGENI 335
+ ++RGE+I
Sbjct: 72 YTVIRGESI 80
>UniRef50_Q2UPT0 Cluster: Predicted protein; n=2; Aspergillus|Rep:
Predicted protein - Aspergillus oryzae
Length = 118
Score = 33.1 bits (72), Expect = 5.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 251
++ I +RV D+R F+G FK D N+IL E+R
Sbjct: 10 LESLIGQTLRVHATDTRIFVGAFKCTDSARNIILASTYEYR 50
>UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins; n=1;
Aspergillus niger|Rep: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins -
Aspergillus niger
Length = 105
Score = 33.1 bits (72), Expect = 5.9
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +3
Query: 132 QQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGF 311
QQ++ RV L +R IG + +D MN++L + E ++ EK +G
Sbjct: 20 QQYMEKRVFCQLNGNRKVIGILRGYDVFMNIVLDEAFEEKQ----------GGEKVAIGM 69
Query: 312 VLLRGENIVSLTI 350
+++RG ++V L +
Sbjct: 70 IVIRGNSVVMLEV 82
>UniRef50_Q9VI10 Cluster: Probable small nuclear ribonucleoprotein
Sm D2; n=32; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein Sm D2 - Drosophila melanogaster (Fruit
fly)
Length = 119
Score = 33.1 bits (72), Expect = 5.9
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +3
Query: 144 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF-----RKIKSKNSKTADREEKRTLG 308
N +V + ++++ +G KAFD+H N++L + +E R K K K + R +
Sbjct: 38 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGK-KKVKPVNKDRFIS 96
Query: 309 FVLLRGENIV 338
+ LRG++++
Sbjct: 97 KMFLRGDSVI 106
>UniRef50_Q01DG8 Cluster: Small nuclear ribonucleoprotein D2-like
protein; n=5; Eukaryota|Rep: Small nuclear
ribonucleoprotein D2-like protein - Ostreococcus tauri
Length = 103
Score = 32.7 bits (71), Expect = 7.8
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +3
Query: 144 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 311
N +V + +++R + KAFD+H N++L + +E K ++K + R +
Sbjct: 28 NTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKGSAKAKPVNKDRFVSK 87
Query: 312 VLLRGENIV 338
+ LRG++++
Sbjct: 88 MFLRGDSVI 96
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,798,866
Number of Sequences: 1657284
Number of extensions: 7954940
Number of successful extensions: 22622
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 22057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22576
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -