Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f01
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)                  129   2e-30
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   1e-04
SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)                   33   0.20 
SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)                   33   0.20 
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_54435| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)          28   5.7  
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)                 28   5.7  
SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)
          Length = 327

 Score =  129 bits (312), Expect = 2e-30
 Identities = 59/83 (71%), Positives = 70/83 (84%)
 Frame = +3

Query: 102 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 281
           K TIGK++KM  HINYR+R  LQD R FIGTF AFDKHMN+ILGDC+EFRKIK K+SK  
Sbjct: 23  KPTIGKSSKMLLHINYRMRCTLQDGRVFIGTFLAFDKHMNVILGDCDEFRKIKGKSSKAQ 82

Query: 282 DREEKRTLGFVLLRGENIVSLTI 350
           +REEKR LG VLLRGE++VS+T+
Sbjct: 83  EREEKRVLGLVLLRGEHLVSMTV 105


>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +3

Query: 117 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 248
           +  +++  +N  +RV + D RT IG+F   DK  N+ILG C+EF
Sbjct: 29  QRKELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEF 72


>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
          Length = 75

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 245
           ++ R+ V +++ R   G   A+D+H+N+IL D EE
Sbjct: 24  LDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEE 58


>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
          Length = 443

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +3

Query: 144 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 311
           N +V +  +++R  +   KAFD+H N++L + +E      K+ K   +     + R +  
Sbjct: 29  NTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKKAKPVNKDRYIAK 88

Query: 312 VLLRGENIV 338
           + LRG++++
Sbjct: 89  MFLRGDSVI 97


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 81  YLPNHSDKMTIGKNNKMQQHINY--RVRVILQDSR 179
           ++P H+  M IGK  +M + I +  RVR I+  SR
Sbjct: 334 FIPEHAMGMVIGKKGRMLEEIKHKTRVRPIIDKSR 368


>SB_54435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 241 KNSEKLNLKIVKLQTEKKK 297
           K   KLN+K+ KL+TEKKK
Sbjct: 34  KEVRKLNIKVEKLKTEKKK 52


>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
          Length = 772

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 518 GTRKSWSTFCSSSNARRPHDGW-PSSRNDGSSSWHGSWWART 640
           GT   W+    S+   +P  G  P  R +GS+   G+WW  T
Sbjct: 314 GTLLGWTRIGGSAFDNQPTYGDNPFHRGEGSAGLDGNWWIST 355


>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
          Length = 1423

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 518 GTRKSWSTFCSSSNARRPHDGW-PSSRNDGSSSWHGSWWART 640
           GT   W+    S+   +P  G  P  R +GS+   G+WW  T
Sbjct: 11  GTLLGWTRIGGSAFDNQPTYGDNPFHRGEGSAGLDGNWWIST 52


>SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 135 VASYCFCRSSFYRSD*EDITRYLESFNLLQRYSLDSC 25
           V ++ FC  SF RSD  ++ R+L +    +R+  D C
Sbjct: 373 VCNWLFCGKSFTRSD--ELQRHLRTHTGEKRFQCDEC 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,106
Number of Sequences: 59808
Number of extensions: 260218
Number of successful extensions: 560
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)